Hb_000366_010

Information

Type -
Description -
Location Contig366: 3784-4716
Sequence    

Annotation

kegg
ID pxb:103936735
description pentatricopeptide repeat-containing protein At1g08070-like
nr
ID XP_009344863.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like, partial [Pyrus x bretschneideri]
swissprot
ID Q7X6A5
description Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
trembl
ID A0A059BEE8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01907 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000366_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like, partial [Pyrus x bretschneideri]
2 Hb_000300_150 0.2430322782 - - Peroxidase 44 precursor, putative [Ricinus communis]
3 Hb_004734_010 0.2675564091 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
4 Hb_000025_610 0.2862189732 - - annexin, putative [Ricinus communis]
5 Hb_003656_060 0.2945438661 - - monooxygenase, putative [Ricinus communis]
6 Hb_004712_150 0.3088025047 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000062_260 0.3166088865 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
8 Hb_000699_100 0.3188495187 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
9 Hb_032699_010 0.3202335818 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_006807_050 0.3226831412 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
11 Hb_005066_080 0.3346444514 - - hypothetical protein PRUPE_ppa025081mg [Prunus persica]
12 Hb_000357_120 0.3355554429 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
13 Hb_010174_080 0.3360543941 - - -
14 Hb_001700_010 0.3361392556 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
15 Hb_006787_050 0.3366126886 - - hypothetical protein JCGZ_23988 [Jatropha curcas]
16 Hb_011942_070 0.3386309096 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
17 Hb_007416_190 0.3394399043 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
18 Hb_003927_050 0.340708492 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
19 Hb_000497_040 0.3408735014 - - BnaC09g09960D [Brassica napus]
20 Hb_000270_260 0.3420367765 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]

Gene co-expression network

sample Hb_000366_010 Hb_000366_010 Hb_000300_150 Hb_000300_150 Hb_000366_010--Hb_000300_150 Hb_004734_010 Hb_004734_010 Hb_000366_010--Hb_004734_010 Hb_000025_610 Hb_000025_610 Hb_000366_010--Hb_000025_610 Hb_003656_060 Hb_003656_060 Hb_000366_010--Hb_003656_060 Hb_004712_150 Hb_004712_150 Hb_000366_010--Hb_004712_150 Hb_000062_260 Hb_000062_260 Hb_000366_010--Hb_000062_260 Hb_000300_150--Hb_004734_010 Hb_032699_010 Hb_032699_010 Hb_000300_150--Hb_032699_010 Hb_000300_150--Hb_004712_150 Hb_000103_480 Hb_000103_480 Hb_000300_150--Hb_000103_480 Hb_003952_060 Hb_003952_060 Hb_000300_150--Hb_003952_060 Hb_000189_140 Hb_000189_140 Hb_004734_010--Hb_000189_140 Hb_004734_010--Hb_003656_060 Hb_001373_180 Hb_001373_180 Hb_004734_010--Hb_001373_180 Hb_001473_040 Hb_001473_040 Hb_004734_010--Hb_001473_040 Hb_001511_070 Hb_001511_070 Hb_004734_010--Hb_001511_070 Hb_099084_010 Hb_099084_010 Hb_000025_610--Hb_099084_010 Hb_000256_040 Hb_000256_040 Hb_000025_610--Hb_000256_040 Hb_000566_050 Hb_000566_050 Hb_000025_610--Hb_000566_050 Hb_000809_020 Hb_000809_020 Hb_000025_610--Hb_000809_020 Hb_001638_330 Hb_001638_330 Hb_000025_610--Hb_001638_330 Hb_003688_040 Hb_003688_040 Hb_000025_610--Hb_003688_040 Hb_003656_060--Hb_001473_040 Hb_004223_030 Hb_004223_030 Hb_003656_060--Hb_004223_030 Hb_000033_020 Hb_000033_020 Hb_003656_060--Hb_000033_020 Hb_005188_020 Hb_005188_020 Hb_003656_060--Hb_005188_020 Hb_000009_450 Hb_000009_450 Hb_003656_060--Hb_000009_450 Hb_003090_260 Hb_003090_260 Hb_003656_060--Hb_003090_260 Hb_000024_010 Hb_000024_010 Hb_004712_150--Hb_000024_010 Hb_005018_020 Hb_005018_020 Hb_004712_150--Hb_005018_020 Hb_001252_230 Hb_001252_230 Hb_004712_150--Hb_001252_230 Hb_003728_040 Hb_003728_040 Hb_004712_150--Hb_003728_040 Hb_000806_030 Hb_000806_030 Hb_004712_150--Hb_000806_030 Hb_000645_130 Hb_000645_130 Hb_004712_150--Hb_000645_130 Hb_006816_180 Hb_006816_180 Hb_000062_260--Hb_006816_180 Hb_002639_140 Hb_002639_140 Hb_000062_260--Hb_002639_140 Hb_001700_010 Hb_001700_010 Hb_000062_260--Hb_001700_010 Hb_002217_260 Hb_002217_260 Hb_000062_260--Hb_002217_260 Hb_009775_010 Hb_009775_010 Hb_000062_260--Hb_009775_010 Hb_004398_030 Hb_004398_030 Hb_000062_260--Hb_004398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187003 0.120766 0.209411 0 0 0.160897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.173929 0.238954 0.0350346 0.176979

CAGE analysis