Hb_000025_610

Information

Type -
Description -
Location Contig25: 571095-572601
Sequence    

Annotation

kegg
ID rcu:RCOM_0832940
description annexin, putative
nr
ID XP_002527036.1
description annexin, putative [Ricinus communis]
swissprot
ID Q94CK4
description Annexin D8 OS=Arabidopsis thaliana GN=ANNAT8 PE=2 SV=2
trembl
ID B9SM17
description Annexin, putative OS=Ricinus communis GN=RCOM_0832940 PE=4 SV=1
Gene Ontology
ID GO:0005509
description annexin d8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26148: 566705-570453 , PASA_asmbl_26150: 572046-572454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_610 0.0 - - annexin, putative [Ricinus communis]
2 Hb_099084_010 0.1893143751 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_000256_040 0.2185972704 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
4 Hb_000566_050 0.2250562608 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
5 Hb_000809_020 0.2287539821 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_001638_330 0.2307385174 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
7 Hb_003688_040 0.2313767804 - - -
8 Hb_012286_020 0.2320836593 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
9 Hb_001357_200 0.2334220206 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
10 Hb_004097_130 0.2345652451 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
11 Hb_000357_120 0.2352642617 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
12 Hb_010174_080 0.2352873581 - - -
13 Hb_007527_010 0.2365182475 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001247_110 0.2377490225 - - Polygalacturonase precursor, putative [Ricinus communis]
15 Hb_005018_020 0.2404548745 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
16 Hb_000011_410 0.2406637641 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000197_200 0.2412175655 - - Sec14 cytosolic factor, putative [Ricinus communis]
18 Hb_005285_020 0.2415549533 - - -
19 Hb_000663_080 0.2424790321 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
20 Hb_002102_020 0.2436517708 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_610 Hb_000025_610 Hb_099084_010 Hb_099084_010 Hb_000025_610--Hb_099084_010 Hb_000256_040 Hb_000256_040 Hb_000025_610--Hb_000256_040 Hb_000566_050 Hb_000566_050 Hb_000025_610--Hb_000566_050 Hb_000809_020 Hb_000809_020 Hb_000025_610--Hb_000809_020 Hb_001638_330 Hb_001638_330 Hb_000025_610--Hb_001638_330 Hb_003688_040 Hb_003688_040 Hb_000025_610--Hb_003688_040 Hb_003177_070 Hb_003177_070 Hb_099084_010--Hb_003177_070 Hb_027043_010 Hb_027043_010 Hb_099084_010--Hb_027043_010 Hb_099084_010--Hb_000809_020 Hb_000045_160 Hb_000045_160 Hb_099084_010--Hb_000045_160 Hb_111552_010 Hb_111552_010 Hb_099084_010--Hb_111552_010 Hb_001009_120 Hb_001009_120 Hb_099084_010--Hb_001009_120 Hb_007533_040 Hb_007533_040 Hb_000256_040--Hb_007533_040 Hb_000197_250 Hb_000197_250 Hb_000256_040--Hb_000197_250 Hb_005245_100 Hb_005245_100 Hb_000256_040--Hb_005245_100 Hb_000140_090 Hb_000140_090 Hb_000256_040--Hb_000140_090 Hb_001357_200 Hb_001357_200 Hb_000256_040--Hb_001357_200 Hb_000925_130 Hb_000925_130 Hb_000256_040--Hb_000925_130 Hb_012286_020 Hb_012286_020 Hb_000566_050--Hb_012286_020 Hb_004003_030 Hb_004003_030 Hb_000566_050--Hb_004003_030 Hb_021576_150 Hb_021576_150 Hb_000566_050--Hb_021576_150 Hb_001799_160 Hb_001799_160 Hb_000566_050--Hb_001799_160 Hb_171554_010 Hb_171554_010 Hb_000566_050--Hb_171554_010 Hb_004032_320 Hb_004032_320 Hb_000566_050--Hb_004032_320 Hb_007527_010 Hb_007527_010 Hb_000809_020--Hb_007527_010 Hb_011618_070 Hb_011618_070 Hb_000809_020--Hb_011618_070 Hb_000243_260 Hb_000243_260 Hb_000809_020--Hb_000243_260 Hb_000809_020--Hb_111552_010 Hb_012539_060 Hb_012539_060 Hb_000809_020--Hb_012539_060 Hb_012632_010 Hb_012632_010 Hb_000809_020--Hb_012632_010 Hb_008173_150 Hb_008173_150 Hb_001638_330--Hb_008173_150 Hb_000673_010 Hb_000673_010 Hb_001638_330--Hb_000673_010 Hb_102948_010 Hb_102948_010 Hb_001638_330--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_001638_330--Hb_001430_020 Hb_003408_060 Hb_003408_060 Hb_001638_330--Hb_003408_060 Hb_000555_020 Hb_000555_020 Hb_001638_330--Hb_000555_020 Hb_004097_130 Hb_004097_130 Hb_003688_040--Hb_004097_130 Hb_002485_030 Hb_002485_030 Hb_003688_040--Hb_002485_030 Hb_000108_050 Hb_000108_050 Hb_003688_040--Hb_000108_050 Hb_024836_010 Hb_024836_010 Hb_003688_040--Hb_024836_010 Hb_000022_190 Hb_000022_190 Hb_003688_040--Hb_000022_190 Hb_000635_090 Hb_000635_090 Hb_003688_040--Hb_000635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.058008 0.0773448 0.144003 0.0571267 0.0232572 0.0518848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0417805 0.153413 0.0168177 0.0852352

CAGE analysis