Hb_000197_250

Information

Type -
Description -
Location Contig197: 330571-340350
Sequence    

Annotation

kegg
ID rcu:RCOM_1448440
description Chaperone protein dnaJ, putative
nr
ID XP_002512946.1
description Chaperone protein dnaJ, putative [Ricinus communis]
swissprot
ID Q8GYX8
description Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2
trembl
ID B9RH87
description Chaperone protein dnaJ, putative OS=Ricinus communis GN=RCOM_1448440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19782: 330584-340403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_250 0.0 - - Chaperone protein dnaJ, putative [Ricinus communis]
2 Hb_003657_010 0.0835908575 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000256_040 0.0933340054 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
4 Hb_005245_100 0.0958870439 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
5 Hb_004117_260 0.0988713455 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000393_020 0.1025465571 - - lipid binding protein, putative [Ricinus communis]
7 Hb_006162_030 0.1061419919 - - PREDICTED: alpha-L-fucosidase 2-like isoform X1 [Populus euphratica]
8 Hb_022250_060 0.1119524932 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
9 Hb_000549_040 0.1136864101 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
10 Hb_007317_010 0.1148903492 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000088_170 0.1152149149 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
12 Hb_000926_090 0.1198382996 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
13 Hb_004429_020 0.1198617601 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
14 Hb_005867_090 0.119897156 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
15 Hb_000349_260 0.1214567712 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
16 Hb_002217_020 0.1222345662 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
17 Hb_010578_080 0.1228797579 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
18 Hb_000925_130 0.1233741744 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
19 Hb_004162_130 0.1241572093 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003607_130 0.1256132524 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000197_250 Hb_000197_250 Hb_003657_010 Hb_003657_010 Hb_000197_250--Hb_003657_010 Hb_000256_040 Hb_000256_040 Hb_000197_250--Hb_000256_040 Hb_005245_100 Hb_005245_100 Hb_000197_250--Hb_005245_100 Hb_004117_260 Hb_004117_260 Hb_000197_250--Hb_004117_260 Hb_000393_020 Hb_000393_020 Hb_000197_250--Hb_000393_020 Hb_006162_030 Hb_006162_030 Hb_000197_250--Hb_006162_030 Hb_003657_010--Hb_004117_260 Hb_022256_020 Hb_022256_020 Hb_003657_010--Hb_022256_020 Hb_004208_030 Hb_004208_030 Hb_003657_010--Hb_004208_030 Hb_000008_440 Hb_000008_440 Hb_003657_010--Hb_000008_440 Hb_010068_080 Hb_010068_080 Hb_003657_010--Hb_010068_080 Hb_007533_040 Hb_007533_040 Hb_000256_040--Hb_007533_040 Hb_000256_040--Hb_005245_100 Hb_000140_090 Hb_000140_090 Hb_000256_040--Hb_000140_090 Hb_001357_200 Hb_001357_200 Hb_000256_040--Hb_001357_200 Hb_000925_130 Hb_000925_130 Hb_000256_040--Hb_000925_130 Hb_001717_010 Hb_001717_010 Hb_005245_100--Hb_001717_010 Hb_003607_130 Hb_003607_130 Hb_005245_100--Hb_003607_130 Hb_005245_100--Hb_000925_130 Hb_000088_170 Hb_000088_170 Hb_005245_100--Hb_000088_170 Hb_000069_310 Hb_000069_310 Hb_005245_100--Hb_000069_310 Hb_062226_130 Hb_062226_130 Hb_005245_100--Hb_062226_130 Hb_004117_260--Hb_000393_020 Hb_050622_050 Hb_050622_050 Hb_004117_260--Hb_050622_050 Hb_006017_010 Hb_006017_010 Hb_004117_260--Hb_006017_010 Hb_000926_090 Hb_000926_090 Hb_004117_260--Hb_000926_090 Hb_001314_070 Hb_001314_070 Hb_004117_260--Hb_001314_070 Hb_004078_040 Hb_004078_040 Hb_000393_020--Hb_004078_040 Hb_000349_260 Hb_000349_260 Hb_000393_020--Hb_000349_260 Hb_001300_150 Hb_001300_150 Hb_000393_020--Hb_001300_150 Hb_000928_070 Hb_000928_070 Hb_000393_020--Hb_000928_070 Hb_000393_020--Hb_001314_070 Hb_000637_110 Hb_000637_110 Hb_006162_030--Hb_000637_110 Hb_006162_030--Hb_003657_010 Hb_005137_040 Hb_005137_040 Hb_006162_030--Hb_005137_040 Hb_006162_030--Hb_000349_260 Hb_000317_040 Hb_000317_040 Hb_006162_030--Hb_000317_040 Hb_006162_030--Hb_000393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1597 47.8792 58.8939 47.4608 29.9946 20.6487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0321 43.183 78.9052 32.8533 26.5108

CAGE analysis