Hb_006162_030

Information

Type -
Description -
Location Contig6162: 35054-46494
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09690g
description POPTRDRAFT_1087269; hypothetical protein
nr
ID XP_011001328.1
description PREDICTED: alpha-L-fucosidase 2-like isoform X1 [Populus euphratica]
swissprot
ID Q8L7W8
description Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=FUC95A PE=1 SV=1
trembl
ID B9HS76
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09690g PE=4 SV=2
Gene Ontology
ID GO:0047513
description alpha-l-fucosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51234: 1288-37128 , PASA_asmbl_51236: 39145-46484 , PASA_asmbl_51237: 41052-41599 , PASA_asmbl_51238: 41782-41990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006162_030 0.0 - - PREDICTED: alpha-L-fucosidase 2-like isoform X1 [Populus euphratica]
2 Hb_000637_110 0.0860553107 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
3 Hb_003657_010 0.0864316117 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005137_040 0.0866828693 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
5 Hb_000349_260 0.0908913089 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
6 Hb_000317_040 0.0909440539 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
7 Hb_000393_020 0.0991795187 - - lipid binding protein, putative [Ricinus communis]
8 Hb_003058_260 0.0999335546 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
9 Hb_000441_220 0.1005152972 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_012506_030 0.1018582916 - - AP-2 complex subunit alpha, putative [Ricinus communis]
11 Hb_000088_170 0.1018728596 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
12 Hb_000926_090 0.1022217019 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
13 Hb_004117_260 0.1027755067 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000856_040 0.102949988 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
15 Hb_002007_080 0.1038928963 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_000008_440 0.1040482036 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
17 Hb_170416_010 0.1051283138 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
18 Hb_001699_220 0.1057539332 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
19 Hb_000197_250 0.1061419919 - - Chaperone protein dnaJ, putative [Ricinus communis]
20 Hb_001124_130 0.107233774 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006162_030 Hb_006162_030 Hb_000637_110 Hb_000637_110 Hb_006162_030--Hb_000637_110 Hb_003657_010 Hb_003657_010 Hb_006162_030--Hb_003657_010 Hb_005137_040 Hb_005137_040 Hb_006162_030--Hb_005137_040 Hb_000349_260 Hb_000349_260 Hb_006162_030--Hb_000349_260 Hb_000317_040 Hb_000317_040 Hb_006162_030--Hb_000317_040 Hb_000393_020 Hb_000393_020 Hb_006162_030--Hb_000393_020 Hb_000637_110--Hb_000349_260 Hb_000637_110--Hb_005137_040 Hb_001473_160 Hb_001473_160 Hb_000637_110--Hb_001473_160 Hb_000088_170 Hb_000088_170 Hb_000637_110--Hb_000088_170 Hb_000300_500 Hb_000300_500 Hb_000637_110--Hb_000300_500 Hb_006455_120 Hb_006455_120 Hb_000637_110--Hb_006455_120 Hb_004117_260 Hb_004117_260 Hb_003657_010--Hb_004117_260 Hb_022256_020 Hb_022256_020 Hb_003657_010--Hb_022256_020 Hb_004208_030 Hb_004208_030 Hb_003657_010--Hb_004208_030 Hb_000197_250 Hb_000197_250 Hb_003657_010--Hb_000197_250 Hb_000008_440 Hb_000008_440 Hb_003657_010--Hb_000008_440 Hb_010068_080 Hb_010068_080 Hb_003657_010--Hb_010068_080 Hb_005918_010 Hb_005918_010 Hb_005137_040--Hb_005918_010 Hb_012506_030 Hb_012506_030 Hb_005137_040--Hb_012506_030 Hb_105105_010 Hb_105105_010 Hb_005137_040--Hb_105105_010 Hb_005137_040--Hb_000088_170 Hb_000441_220 Hb_000441_220 Hb_005137_040--Hb_000441_220 Hb_000260_350 Hb_000260_350 Hb_000349_260--Hb_000260_350 Hb_000349_260--Hb_000088_170 Hb_001511_060 Hb_001511_060 Hb_000349_260--Hb_001511_060 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_000349_260--Hb_001473_160 Hb_003777_200 Hb_003777_200 Hb_000317_040--Hb_003777_200 Hb_000703_190 Hb_000703_190 Hb_000317_040--Hb_000703_190 Hb_019181_040 Hb_019181_040 Hb_000317_040--Hb_019181_040 Hb_002326_040 Hb_002326_040 Hb_000317_040--Hb_002326_040 Hb_000046_500 Hb_000046_500 Hb_000317_040--Hb_000046_500 Hb_000317_040--Hb_012506_030 Hb_000393_020--Hb_004117_260 Hb_004078_040 Hb_004078_040 Hb_000393_020--Hb_004078_040 Hb_000393_020--Hb_000349_260 Hb_001300_150 Hb_001300_150 Hb_000393_020--Hb_001300_150 Hb_000928_070 Hb_000928_070 Hb_000393_020--Hb_000928_070 Hb_001314_070 Hb_001314_070 Hb_000393_020--Hb_001314_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59013 7.4104 10.9097 7.74709 4.94215 5.37326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.80369 4.3997 12.1141 6.96407 6.50721

CAGE analysis