Hb_004003_030

Information

Type -
Description -
Location Contig4003: 40820-46266
Sequence    

Annotation

kegg
ID rcu:RCOM_1685500
description hypothetical protein
nr
ID XP_002509745.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3EA54
description CASP-like protein 4A4 OS=Arabidopsis thaliana GN=At4g11655 PE=2 SV=1
trembl
ID B9RC61
description CASP-like protein OS=Ricinus communis GN=RCOM_1685500 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 4a4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39817: 40729-44471 , PASA_asmbl_39818: 41338-44471 , PASA_asmbl_39819: 45462-46098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004003_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000566_050 0.0917391787 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
3 Hb_001799_160 0.0946480837 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000787_080 0.0948953123 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
5 Hb_000003_680 0.0961295819 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
6 Hb_021576_150 0.097366265 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
7 Hb_000318_220 0.1000864355 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012286_020 0.1004811756 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
9 Hb_001053_190 0.1030830173 - - ADP,ATP carrier protein, putative [Ricinus communis]
10 Hb_000072_300 0.1041886556 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
11 Hb_007919_110 0.1104292944 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
12 Hb_002272_240 0.1121621411 - - catalytic, putative [Ricinus communis]
13 Hb_003687_080 0.113155852 - - PREDICTED: casein kinase I-like [Jatropha curcas]
14 Hb_004712_190 0.1140301442 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
15 Hb_003449_100 0.1155244224 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
16 Hb_002304_050 0.1167965425 - - pyruvate kinase, putative [Ricinus communis]
17 Hb_027506_040 0.116812239 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
18 Hb_171554_010 0.117574348 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
19 Hb_006438_020 0.117578438 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
20 Hb_061256_010 0.1180323366 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004003_030 Hb_004003_030 Hb_000566_050 Hb_000566_050 Hb_004003_030--Hb_000566_050 Hb_001799_160 Hb_001799_160 Hb_004003_030--Hb_001799_160 Hb_000787_080 Hb_000787_080 Hb_004003_030--Hb_000787_080 Hb_000003_680 Hb_000003_680 Hb_004003_030--Hb_000003_680 Hb_021576_150 Hb_021576_150 Hb_004003_030--Hb_021576_150 Hb_000318_220 Hb_000318_220 Hb_004003_030--Hb_000318_220 Hb_012286_020 Hb_012286_020 Hb_000566_050--Hb_012286_020 Hb_000566_050--Hb_021576_150 Hb_000566_050--Hb_001799_160 Hb_171554_010 Hb_171554_010 Hb_000566_050--Hb_171554_010 Hb_004032_320 Hb_004032_320 Hb_000566_050--Hb_004032_320 Hb_001799_160--Hb_000318_220 Hb_003498_100 Hb_003498_100 Hb_001799_160--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_001799_160--Hb_000120_890 Hb_001504_010 Hb_001504_010 Hb_001799_160--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_001799_160--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_001799_160--Hb_001053_190 Hb_001766_070 Hb_001766_070 Hb_000787_080--Hb_001766_070 Hb_000787_080--Hb_000003_680 Hb_000258_420 Hb_000258_420 Hb_000787_080--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_000787_080--Hb_000815_310 Hb_033152_090 Hb_033152_090 Hb_000787_080--Hb_033152_090 Hb_000137_010 Hb_000137_010 Hb_000787_080--Hb_000137_010 Hb_000003_680--Hb_012286_020 Hb_087313_010 Hb_087313_010 Hb_000003_680--Hb_087313_010 Hb_000003_680--Hb_021576_150 Hb_002218_020 Hb_002218_020 Hb_000003_680--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_000003_680--Hb_102948_010 Hb_021576_150--Hb_001799_160 Hb_001191_080 Hb_001191_080 Hb_021576_150--Hb_001191_080 Hb_021576_150--Hb_012286_020 Hb_021576_150--Hb_000787_080 Hb_000327_330 Hb_000327_330 Hb_000318_220--Hb_000327_330 Hb_003883_010 Hb_003883_010 Hb_000318_220--Hb_003883_010 Hb_000318_220--Hb_002218_020 Hb_000318_220--Hb_001504_010 Hb_000318_220--Hb_001053_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18082 7.03796 17.4337 14.5842 2.39701 3.0929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.96763 4.4167 6.12199 4.21291 8.47216

CAGE analysis