Hb_027043_010

Information

Type -
Description -
Location Contig27043: 23978-30133
Sequence    

Annotation

kegg
ID rcu:RCOM_1329270
description glycerophosphoryl diester phosphodiesterase, putative
nr
ID XP_012079723.1
description PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
swissprot
ID F4I8H8
description Glycerophosphodiester phosphodiesterase GDPD4 OS=Arabidopsis thaliana GN=GDPD4 PE=2 SV=1
trembl
ID B9S6X7
description Glycerophosphoryl diester phosphodiesterase, putative OS=Ricinus communis GN=RCOM_1329270 PE=4 SV=1
Gene Ontology
ID GO:0008889
description glycerophosphodiester phosphodiesterase gdpd4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28375: 27877-29592 , PASA_asmbl_28376: 29595-30176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027043_010 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
2 Hb_000477_070 0.0943830675 - - histone h2a, putative [Ricinus communis]
3 Hb_002849_050 0.1052626731 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
4 Hb_000649_330 0.112235029 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
5 Hb_052135_020 0.1143435066 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
6 Hb_002259_220 0.1224889294 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
7 Hb_000015_150 0.1227369698 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
8 Hb_001117_080 0.1251808287 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
9 Hb_002783_190 0.1268425265 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
10 Hb_000098_180 0.1272838227 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
11 Hb_011188_010 0.1320028675 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
12 Hb_005741_040 0.135189476 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
13 Hb_004545_080 0.1357021895 - - protein with unknown function [Ricinus communis]
14 Hb_001663_130 0.1365715437 - - acyl-CoA thioesterase, putative [Ricinus communis]
15 Hb_000317_110 0.1374214148 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_002432_050 0.1388225553 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
17 Hb_001279_020 0.1394132157 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
18 Hb_000012_320 0.1395239227 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
19 Hb_001001_090 0.1416041191 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
20 Hb_000567_090 0.1425977767 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_027043_010 Hb_027043_010 Hb_000477_070 Hb_000477_070 Hb_027043_010--Hb_000477_070 Hb_002849_050 Hb_002849_050 Hb_027043_010--Hb_002849_050 Hb_000649_330 Hb_000649_330 Hb_027043_010--Hb_000649_330 Hb_052135_020 Hb_052135_020 Hb_027043_010--Hb_052135_020 Hb_002259_220 Hb_002259_220 Hb_027043_010--Hb_002259_220 Hb_000015_150 Hb_000015_150 Hb_027043_010--Hb_000015_150 Hb_011188_010 Hb_011188_010 Hb_000477_070--Hb_011188_010 Hb_000477_070--Hb_002259_220 Hb_002686_410 Hb_002686_410 Hb_000477_070--Hb_002686_410 Hb_007290_070 Hb_007290_070 Hb_000477_070--Hb_007290_070 Hb_002809_160 Hb_002809_160 Hb_000477_070--Hb_002809_160 Hb_005741_040 Hb_005741_040 Hb_002849_050--Hb_005741_040 Hb_024758_020 Hb_024758_020 Hb_002849_050--Hb_024758_020 Hb_002849_050--Hb_011188_010 Hb_009296_020 Hb_009296_020 Hb_002849_050--Hb_009296_020 Hb_001279_020 Hb_001279_020 Hb_002849_050--Hb_001279_020 Hb_001414_010 Hb_001414_010 Hb_002849_050--Hb_001414_010 Hb_001001_090 Hb_001001_090 Hb_000649_330--Hb_001001_090 Hb_000649_330--Hb_000015_150 Hb_009078_020 Hb_009078_020 Hb_000649_330--Hb_009078_020 Hb_000649_330--Hb_002849_050 Hb_000649_330--Hb_011188_010 Hb_005214_070 Hb_005214_070 Hb_000649_330--Hb_005214_070 Hb_002317_010 Hb_002317_010 Hb_052135_020--Hb_002317_010 Hb_129204_020 Hb_129204_020 Hb_052135_020--Hb_129204_020 Hb_000567_090 Hb_000567_090 Hb_052135_020--Hb_000567_090 Hb_010068_070 Hb_010068_070 Hb_052135_020--Hb_010068_070 Hb_052135_020--Hb_024758_020 Hb_005833_030 Hb_005833_030 Hb_052135_020--Hb_005833_030 Hb_004052_110 Hb_004052_110 Hb_002259_220--Hb_004052_110 Hb_001514_240 Hb_001514_240 Hb_002259_220--Hb_001514_240 Hb_002259_220--Hb_011188_010 Hb_002259_220--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_002259_220--Hb_001059_060 Hb_000015_150--Hb_001001_090 Hb_114943_020 Hb_114943_020 Hb_000015_150--Hb_114943_020 Hb_002463_050 Hb_002463_050 Hb_000015_150--Hb_002463_050 Hb_002411_160 Hb_002411_160 Hb_000015_150--Hb_002411_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22309 3.71628 7.27293 4.03914 0.772356 1.50479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22461 0.441726 1.64892 3.16951 3.73112

CAGE analysis