Hb_004712_150

Information

Type -
Description -
Location Contig4712: 86995-91754
Sequence    

Annotation

kegg
ID tcc:TCM_018243
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_150 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000024_010 0.1401344849 - - Uncharacterized protein TCM_044274 [Theobroma cacao]
3 Hb_005018_020 0.1831705368 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
4 Hb_001252_230 0.1907612065 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
5 Hb_003728_040 0.1908748389 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
6 Hb_000806_030 0.1926050534 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
7 Hb_000645_130 0.1933242757 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
8 Hb_000120_380 0.1940326445 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
9 Hb_000856_070 0.1959514237 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
10 Hb_000072_250 0.1976624626 transcription factor TF Family: Orphans -
11 Hb_002174_030 0.1977193262 - - transcription elongation factor s-II, putative [Ricinus communis]
12 Hb_011161_020 0.197963661 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
13 Hb_034350_020 0.1987473519 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
14 Hb_011930_110 0.2015790227 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
15 Hb_002329_020 0.204147668 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
16 Hb_097185_010 0.2050370554 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
17 Hb_000500_300 0.2052480599 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
18 Hb_002581_010 0.2066112488 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
19 Hb_009393_220 0.2066837748 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
20 Hb_006816_180 0.2067228544 - - -

Gene co-expression network

sample Hb_004712_150 Hb_004712_150 Hb_000024_010 Hb_000024_010 Hb_004712_150--Hb_000024_010 Hb_005018_020 Hb_005018_020 Hb_004712_150--Hb_005018_020 Hb_001252_230 Hb_001252_230 Hb_004712_150--Hb_001252_230 Hb_003728_040 Hb_003728_040 Hb_004712_150--Hb_003728_040 Hb_000806_030 Hb_000806_030 Hb_004712_150--Hb_000806_030 Hb_000645_130 Hb_000645_130 Hb_004712_150--Hb_000645_130 Hb_002241_030 Hb_002241_030 Hb_000024_010--Hb_002241_030 Hb_029243_020 Hb_029243_020 Hb_000024_010--Hb_029243_020 Hb_000656_060 Hb_000656_060 Hb_000024_010--Hb_000656_060 Hb_000661_260 Hb_000661_260 Hb_000024_010--Hb_000661_260 Hb_000920_130 Hb_000920_130 Hb_000024_010--Hb_000920_130 Hb_000291_010 Hb_000291_010 Hb_005018_020--Hb_000291_010 Hb_060094_020 Hb_060094_020 Hb_005018_020--Hb_060094_020 Hb_000061_030 Hb_000061_030 Hb_005018_020--Hb_000061_030 Hb_001104_170 Hb_001104_170 Hb_005018_020--Hb_001104_170 Hb_002263_040 Hb_002263_040 Hb_005018_020--Hb_002263_040 Hb_002329_020 Hb_002329_020 Hb_005018_020--Hb_002329_020 Hb_001252_230--Hb_060094_020 Hb_000645_170 Hb_000645_170 Hb_001252_230--Hb_000645_170 Hb_000205_260 Hb_000205_260 Hb_001252_230--Hb_000205_260 Hb_007044_110 Hb_007044_110 Hb_001252_230--Hb_007044_110 Hb_005288_070 Hb_005288_070 Hb_001252_230--Hb_005288_070 Hb_000086_500 Hb_000086_500 Hb_001252_230--Hb_000086_500 Hb_003055_140 Hb_003055_140 Hb_003728_040--Hb_003055_140 Hb_001766_020 Hb_001766_020 Hb_003728_040--Hb_001766_020 Hb_000442_010 Hb_000442_010 Hb_003728_040--Hb_000442_010 Hb_004440_040 Hb_004440_040 Hb_003728_040--Hb_004440_040 Hb_003728_040--Hb_001104_170 Hb_000347_120 Hb_000347_120 Hb_003728_040--Hb_000347_120 Hb_004659_090 Hb_004659_090 Hb_000806_030--Hb_004659_090 Hb_002056_100 Hb_002056_100 Hb_000806_030--Hb_002056_100 Hb_000806_030--Hb_000645_130 Hb_001279_040 Hb_001279_040 Hb_000806_030--Hb_001279_040 Hb_000179_190 Hb_000179_190 Hb_000806_030--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000806_030--Hb_003929_210 Hb_009302_030 Hb_009302_030 Hb_000645_130--Hb_009302_030 Hb_000958_050 Hb_000958_050 Hb_000645_130--Hb_000958_050 Hb_000645_130--Hb_004659_090 Hb_003939_060 Hb_003939_060 Hb_000645_130--Hb_003939_060 Hb_000500_300 Hb_000500_300 Hb_000645_130--Hb_000500_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0972076 0.119603 0.0925605 0.00620214 0.021644 0.0423835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0297802 0.0312486 0.0750937 0.0587694 0.117314

CAGE analysis