Hb_002241_030

Information

Type -
Description -
Location Contig2241: 41886-48543
Sequence    

Annotation

kegg
ID tcc:TCM_017700
description Retrotransposon protein, putative
nr
ID XP_007032220.1
description Retrotransposon protein, putative [Theobroma cacao]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061EE03
description Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_017700 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002241_030 0.0 - - Retrotransposon protein, putative [Theobroma cacao]
2 Hb_000024_010 0.1505691792 - - Uncharacterized protein TCM_044274 [Theobroma cacao]
3 Hb_000417_200 0.1531748106 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
4 Hb_000170_130 0.1547351392 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
5 Hb_000656_060 0.158463661 - - DNA binding protein, putative [Ricinus communis]
6 Hb_002686_090 0.1585436602 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
7 Hb_012506_040 0.1594399587 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
8 Hb_004204_010 0.1600804174 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
9 Hb_001541_070 0.1607267352 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
10 Hb_000154_130 0.1627006845 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
11 Hb_001405_070 0.1646776837 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
12 Hb_000619_030 0.1651969288 - - unnamed protein product [Vitis vinifera]
13 Hb_029243_020 0.1657633106 - - ENTH/VHS/GAT family protein [Theobroma cacao]
14 Hb_000270_120 0.1669388723 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
15 Hb_005489_070 0.1707668939 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
16 Hb_011021_050 0.1715540344 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
17 Hb_000589_380 0.1720970114 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
18 Hb_001865_070 0.1721587813 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
19 Hb_011671_410 0.1727313174 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
20 Hb_000120_040 0.1744704857 - - -

Gene co-expression network

sample Hb_002241_030 Hb_002241_030 Hb_000024_010 Hb_000024_010 Hb_002241_030--Hb_000024_010 Hb_000417_200 Hb_000417_200 Hb_002241_030--Hb_000417_200 Hb_000170_130 Hb_000170_130 Hb_002241_030--Hb_000170_130 Hb_000656_060 Hb_000656_060 Hb_002241_030--Hb_000656_060 Hb_002686_090 Hb_002686_090 Hb_002241_030--Hb_002686_090 Hb_012506_040 Hb_012506_040 Hb_002241_030--Hb_012506_040 Hb_004712_150 Hb_004712_150 Hb_000024_010--Hb_004712_150 Hb_029243_020 Hb_029243_020 Hb_000024_010--Hb_029243_020 Hb_000024_010--Hb_000656_060 Hb_000661_260 Hb_000661_260 Hb_000024_010--Hb_000661_260 Hb_000920_130 Hb_000920_130 Hb_000024_010--Hb_000920_130 Hb_001405_070 Hb_001405_070 Hb_000417_200--Hb_001405_070 Hb_012725_060 Hb_012725_060 Hb_000417_200--Hb_012725_060 Hb_002235_040 Hb_002235_040 Hb_000417_200--Hb_002235_040 Hb_000417_200--Hb_000170_130 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_011671_410 Hb_011671_410 Hb_000170_130--Hb_011671_410 Hb_000170_130--Hb_012506_040 Hb_000170_130--Hb_002686_090 Hb_002542_110 Hb_002542_110 Hb_000170_130--Hb_002542_110 Hb_006816_370 Hb_006816_370 Hb_000170_130--Hb_006816_370 Hb_062226_070 Hb_062226_070 Hb_000170_130--Hb_062226_070 Hb_005186_040 Hb_005186_040 Hb_000656_060--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_000656_060--Hb_011021_050 Hb_001726_050 Hb_001726_050 Hb_000656_060--Hb_001726_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_001726_100 Hb_001726_100 Hb_000656_060--Hb_001726_100 Hb_000856_070 Hb_000856_070 Hb_000656_060--Hb_000856_070 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_001716_040 Hb_001716_040 Hb_002686_090--Hb_001716_040 Hb_002686_090--Hb_002542_110 Hb_000465_280 Hb_000465_280 Hb_012506_040--Hb_000465_280 Hb_012506_040--Hb_002686_090 Hb_012506_040--Hb_001865_070 Hb_004374_110 Hb_004374_110 Hb_012506_040--Hb_004374_110 Hb_005701_130 Hb_005701_130 Hb_012506_040--Hb_005701_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0271799 0.0920638 0.0138576 0.0231218 0.0102126 0.0190421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0247103 0.0259293 0.0624261 0.0410393 0.111476

CAGE analysis