Hb_003656_060

Information

Type -
Description -
Location Contig3656: 72323-72850
Sequence    

Annotation

kegg
ID rcu:RCOM_1045980
description monooxygenase, putative
nr
ID XP_002514067.1
description monooxygenase, putative [Ricinus communis]
swissprot
ID P93823
description RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1
trembl
ID B9RK23
description Monooxygenase, putative OS=Ricinus communis GN=RCOM_1045980 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_060 0.0 - - monooxygenase, putative [Ricinus communis]
2 Hb_001473_040 0.1958955602 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_004223_030 0.1962907046 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
4 Hb_000033_020 0.1971679982 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_005188_020 0.2023236818 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
6 Hb_000009_450 0.2034092208 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
7 Hb_003090_260 0.2073136651 - - hypothetical protein JCGZ_25097 [Jatropha curcas]
8 Hb_004690_040 0.2110379823 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
9 Hb_006615_080 0.2111465505 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
10 Hb_001648_030 0.2116778551 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
11 Hb_004734_010 0.2155577849 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
12 Hb_002231_030 0.2158352439 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
13 Hb_002704_070 0.2158406886 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
14 Hb_000510_290 0.2164309499 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
15 Hb_000056_210 0.2176846054 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
16 Hb_001405_070 0.2191357611 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
17 Hb_141990_040 0.2196020215 - - Protein SCAR2, putative [Ricinus communis]
18 Hb_000230_500 0.2202346072 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
19 Hb_000164_020 0.2209506871 - - actin binding protein, putative [Ricinus communis]
20 Hb_003038_240 0.2216995215 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003656_060 Hb_003656_060 Hb_001473_040 Hb_001473_040 Hb_003656_060--Hb_001473_040 Hb_004223_030 Hb_004223_030 Hb_003656_060--Hb_004223_030 Hb_000033_020 Hb_000033_020 Hb_003656_060--Hb_000033_020 Hb_005188_020 Hb_005188_020 Hb_003656_060--Hb_005188_020 Hb_000009_450 Hb_000009_450 Hb_003656_060--Hb_000009_450 Hb_003090_260 Hb_003090_260 Hb_003656_060--Hb_003090_260 Hb_003929_130 Hb_003929_130 Hb_001473_040--Hb_003929_130 Hb_001473_040--Hb_005188_020 Hb_001825_060 Hb_001825_060 Hb_001473_040--Hb_001825_060 Hb_000230_500 Hb_000230_500 Hb_001473_040--Hb_000230_500 Hb_012573_040 Hb_012573_040 Hb_001473_040--Hb_012573_040 Hb_002217_020 Hb_002217_020 Hb_001473_040--Hb_002217_020 Hb_000510_290 Hb_000510_290 Hb_004223_030--Hb_000510_290 Hb_002184_110 Hb_002184_110 Hb_004223_030--Hb_002184_110 Hb_003038_240 Hb_003038_240 Hb_004223_030--Hb_003038_240 Hb_004223_030--Hb_000230_500 Hb_001247_250 Hb_001247_250 Hb_004223_030--Hb_001247_250 Hb_001648_030 Hb_001648_030 Hb_004223_030--Hb_001648_030 Hb_000366_090 Hb_000366_090 Hb_000033_020--Hb_000366_090 Hb_000307_030 Hb_000307_030 Hb_000033_020--Hb_000307_030 Hb_168319_030 Hb_168319_030 Hb_000033_020--Hb_168319_030 Hb_000117_090 Hb_000117_090 Hb_000033_020--Hb_000117_090 Hb_004375_150 Hb_004375_150 Hb_000033_020--Hb_004375_150 Hb_000033_020--Hb_000009_450 Hb_005188_020--Hb_000230_500 Hb_030565_030 Hb_030565_030 Hb_005188_020--Hb_030565_030 Hb_000041_100 Hb_000041_100 Hb_005188_020--Hb_000041_100 Hb_004374_070 Hb_004374_070 Hb_005188_020--Hb_004374_070 Hb_001318_270 Hb_001318_270 Hb_005188_020--Hb_001318_270 Hb_003371_090 Hb_003371_090 Hb_005188_020--Hb_003371_090 Hb_000009_450--Hb_004375_150 Hb_000009_450--Hb_000117_090 Hb_141990_040 Hb_141990_040 Hb_000009_450--Hb_141990_040 Hb_012760_070 Hb_012760_070 Hb_000009_450--Hb_012760_070 Hb_008566_050 Hb_008566_050 Hb_000009_450--Hb_008566_050 Hb_001625_030 Hb_001625_030 Hb_003090_260--Hb_001625_030 Hb_003090_260--Hb_004223_030 Hb_011671_410 Hb_011671_410 Hb_003090_260--Hb_011671_410 Hb_005725_210 Hb_005725_210 Hb_003090_260--Hb_005725_210 Hb_001969_110 Hb_001969_110 Hb_003090_260--Hb_001969_110 Hb_002704_070 Hb_002704_070 Hb_003090_260--Hb_002704_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76536 10.1819 4.68406 1.45564 0.86979 3.65122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58092 13.3257 11.2431 1.15864 8.76572

CAGE analysis