Hb_002704_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2704: 84326-86904
Sequence    

Annotation

kegg
ID rcu:RCOM_0405730
description DNA binding protein, putative
nr
ID XP_012073040.1
description PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
swissprot
ID Q66GR3
description Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1
trembl
ID A0A067KZT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06818 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh130-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28369: 84072-84355 , PASA_asmbl_28370: 84713-86294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002704_070 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
2 Hb_002311_360 0.0769947663 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
3 Hb_000230_500 0.1024415316 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
4 Hb_009803_050 0.1065447086 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
5 Hb_002043_030 0.1091335374 - - hypothetical protein RCOM_1486170 [Ricinus communis]
6 Hb_030565_030 0.1148262107 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
7 Hb_002988_040 0.1162869777 - - -
8 Hb_003371_090 0.117909628 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
9 Hb_005162_060 0.1183001981 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
10 Hb_003020_220 0.1188533125 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
11 Hb_005188_020 0.1217005384 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
12 Hb_092462_020 0.1250547467 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
13 Hb_001373_180 0.1268328733 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
14 Hb_000603_080 0.1273271826 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
15 Hb_002450_020 0.128095175 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
16 Hb_079312_010 0.1282204423 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007508_090 0.1285647221 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
18 Hb_001246_110 0.1294224151 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
19 Hb_000041_100 0.1294687742 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
20 Hb_001405_070 0.1301010127 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]

Gene co-expression network

sample Hb_002704_070 Hb_002704_070 Hb_002311_360 Hb_002311_360 Hb_002704_070--Hb_002311_360 Hb_000230_500 Hb_000230_500 Hb_002704_070--Hb_000230_500 Hb_009803_050 Hb_009803_050 Hb_002704_070--Hb_009803_050 Hb_002043_030 Hb_002043_030 Hb_002704_070--Hb_002043_030 Hb_030565_030 Hb_030565_030 Hb_002704_070--Hb_030565_030 Hb_002988_040 Hb_002988_040 Hb_002704_070--Hb_002988_040 Hb_000856_010 Hb_000856_010 Hb_002311_360--Hb_000856_010 Hb_002311_360--Hb_009803_050 Hb_000928_070 Hb_000928_070 Hb_002311_360--Hb_000928_070 Hb_000309_130 Hb_000309_130 Hb_002311_360--Hb_000309_130 Hb_000008_440 Hb_000008_440 Hb_002311_360--Hb_000008_440 Hb_005188_020 Hb_005188_020 Hb_000230_500--Hb_005188_020 Hb_000041_100 Hb_000041_100 Hb_000230_500--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_000230_500--Hb_003371_090 Hb_000230_500--Hb_002988_040 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_000603_080 Hb_000603_080 Hb_009803_050--Hb_000603_080 Hb_020805_130 Hb_020805_130 Hb_009803_050--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_009803_050--Hb_001959_190 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200 Hb_007810_010 Hb_007810_010 Hb_002043_030--Hb_007810_010 Hb_002043_030--Hb_002311_360 Hb_092462_020 Hb_092462_020 Hb_002043_030--Hb_092462_020 Hb_002043_030--Hb_000309_130 Hb_003038_240 Hb_003038_240 Hb_002043_030--Hb_003038_240 Hb_030565_030--Hb_005188_020 Hb_000836_040 Hb_000836_040 Hb_030565_030--Hb_000836_040 Hb_030565_030--Hb_020805_130 Hb_030565_030--Hb_001959_190 Hb_030565_030--Hb_009803_050 Hb_000913_020 Hb_000913_020 Hb_002988_040--Hb_000913_020 Hb_000497_300 Hb_000497_300 Hb_002988_040--Hb_000497_300 Hb_003020_220 Hb_003020_220 Hb_002988_040--Hb_003020_220 Hb_002988_040--Hb_000041_100 Hb_005686_090 Hb_005686_090 Hb_002988_040--Hb_005686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4107 2.57797 0.952697 1.31975 0.654624 1.34462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71887 2.71584 3.11796 1.10296 2.91858

CAGE analysis