Hb_003090_260

Information

Type -
Description -
Location Contig3090: 242908-246952
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09350g
description POPTRDRAFT_560836; hypothetical protein
nr
ID KDP24533.1
description hypothetical protein JCGZ_25097 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25097 PE=4 SV=1
Gene Ontology
ID GO:0006914
description proteasome inhibitor-related

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32655: 242849-246924 , PASA_asmbl_32656: 242849-246924 , PASA_asmbl_32657: 245596-246018
cDNA
(Sanger)
(ID:Location)		 020_A20.ab1: 243884-246924 , 028_A02.ab1: 244051-246924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_260 0.0 - - hypothetical protein JCGZ_25097 [Jatropha curcas]
2 Hb_001625_030 0.1277929464 - - hypothetical protein JCGZ_20707 [Jatropha curcas]
3 Hb_004223_030 0.1555171349 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
4 Hb_011671_410 0.1647348516 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
5 Hb_005725_210 0.1656697529 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
6 Hb_001969_110 0.1685322824 - - PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
7 Hb_002704_070 0.1714647191 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
8 Hb_000808_030 0.1728000502 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
9 Hb_004117_140 0.1732640089 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
10 Hb_002184_110 0.173752781 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
11 Hb_001405_070 0.174740195 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
12 Hb_103362_010 0.176259761 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_000170_130 0.1763467879 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
14 Hb_092462_020 0.1794656032 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
15 Hb_000574_400 0.1814493225 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
16 Hb_004970_170 0.181714303 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
17 Hb_000230_500 0.1818960115 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
18 Hb_006816_370 0.1841072717 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
19 Hb_002157_080 0.1865067241 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
20 Hb_002542_110 0.187418535 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]

Gene co-expression network

sample Hb_003090_260 Hb_003090_260 Hb_001625_030 Hb_001625_030 Hb_003090_260--Hb_001625_030 Hb_004223_030 Hb_004223_030 Hb_003090_260--Hb_004223_030 Hb_011671_410 Hb_011671_410 Hb_003090_260--Hb_011671_410 Hb_005725_210 Hb_005725_210 Hb_003090_260--Hb_005725_210 Hb_001969_110 Hb_001969_110 Hb_003090_260--Hb_001969_110 Hb_002704_070 Hb_002704_070 Hb_003090_260--Hb_002704_070 Hb_001821_130 Hb_001821_130 Hb_001625_030--Hb_001821_130 Hb_001625_030--Hb_011671_410 Hb_002157_080 Hb_002157_080 Hb_001625_030--Hb_002157_080 Hb_002542_110 Hb_002542_110 Hb_001625_030--Hb_002542_110 Hb_001625_030--Hb_005725_210 Hb_000510_290 Hb_000510_290 Hb_004223_030--Hb_000510_290 Hb_002184_110 Hb_002184_110 Hb_004223_030--Hb_002184_110 Hb_003038_240 Hb_003038_240 Hb_004223_030--Hb_003038_240 Hb_000230_500 Hb_000230_500 Hb_004223_030--Hb_000230_500 Hb_001247_250 Hb_001247_250 Hb_004223_030--Hb_001247_250 Hb_001648_030 Hb_001648_030 Hb_004223_030--Hb_001648_030 Hb_000170_130 Hb_000170_130 Hb_011671_410--Hb_000170_130 Hb_005736_020 Hb_005736_020 Hb_011671_410--Hb_005736_020 Hb_000204_120 Hb_000204_120 Hb_011671_410--Hb_000204_120 Hb_000672_040 Hb_000672_040 Hb_011671_410--Hb_000672_040 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_001999_290 Hb_001999_290 Hb_011671_410--Hb_001999_290 Hb_002798_070 Hb_002798_070 Hb_005725_210--Hb_002798_070 Hb_000442_010 Hb_000442_010 Hb_005725_210--Hb_000442_010 Hb_003030_060 Hb_003030_060 Hb_005725_210--Hb_003030_060 Hb_004916_010 Hb_004916_010 Hb_005725_210--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_005725_210--Hb_002818_030 Hb_001828_130 Hb_001828_130 Hb_005725_210--Hb_001828_130 Hb_000574_400 Hb_000574_400 Hb_001969_110--Hb_000574_400 Hb_005486_030 Hb_005486_030 Hb_001969_110--Hb_005486_030 Hb_000603_110 Hb_000603_110 Hb_001969_110--Hb_000603_110 Hb_009486_060 Hb_009486_060 Hb_001969_110--Hb_009486_060 Hb_002316_150 Hb_002316_150 Hb_001969_110--Hb_002316_150 Hb_001268_380 Hb_001268_380 Hb_001969_110--Hb_001268_380 Hb_002311_360 Hb_002311_360 Hb_002704_070--Hb_002311_360 Hb_002704_070--Hb_000230_500 Hb_009803_050 Hb_009803_050 Hb_002704_070--Hb_009803_050 Hb_002043_030 Hb_002043_030 Hb_002704_070--Hb_002043_030 Hb_030565_030 Hb_030565_030 Hb_002704_070--Hb_030565_030 Hb_002988_040 Hb_002988_040 Hb_002704_070--Hb_002988_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42334 29.1331 8.77129 3.38865 6.52374 12.8539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2067 16.9472 14.0629 4.24174 24.0472

CAGE analysis