Hb_001969_110

Information

Type -
Description -
Location Contig1969: 145568-148976
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05740g
description POPTRDRAFT_413587; pentatricopeptide repeat-containing family protein
nr
ID XP_012073273.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
swissprot
ID Q9M9E2
description Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1
trembl
ID A0A067KLZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06213 PE=4 SV=1
Gene Ontology
ID GO:0009451
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19744: 147238-147468 , PASA_asmbl_19746: 148154-148611
cDNA
(Sanger)
(ID:Location)		 042_A14.ab1: 148154-148606

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
2 Hb_000574_400 0.0850916537 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
3 Hb_005486_030 0.1025471551 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
4 Hb_000603_110 0.103986713 - - copper transporter, putative [Ricinus communis]
5 Hb_009486_060 0.1053292001 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
6 Hb_002316_150 0.1062092982 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
7 Hb_001268_380 0.1075063396 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
8 Hb_009382_010 0.107830098 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_011671_410 0.1121539095 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
10 Hb_000130_490 0.1139287082 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
11 Hb_004635_090 0.1151504319 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
12 Hb_000318_390 0.115591777 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
13 Hb_004117_140 0.1168990186 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
14 Hb_000270_670 0.1174615392 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
15 Hb_027346_010 0.1206019439 - - -
16 Hb_000046_580 0.1213083476 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
17 Hb_002316_160 0.1240243365 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
18 Hb_000890_050 0.1249779128 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
19 Hb_000329_750 0.1254234581 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
20 Hb_002725_120 0.1256338961 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001969_110 Hb_001969_110 Hb_000574_400 Hb_000574_400 Hb_001969_110--Hb_000574_400 Hb_005486_030 Hb_005486_030 Hb_001969_110--Hb_005486_030 Hb_000603_110 Hb_000603_110 Hb_001969_110--Hb_000603_110 Hb_009486_060 Hb_009486_060 Hb_001969_110--Hb_009486_060 Hb_002316_150 Hb_002316_150 Hb_001969_110--Hb_002316_150 Hb_001268_380 Hb_001268_380 Hb_001969_110--Hb_001268_380 Hb_002234_170 Hb_002234_170 Hb_000574_400--Hb_002234_170 Hb_002783_040 Hb_002783_040 Hb_000574_400--Hb_002783_040 Hb_000574_400--Hb_009486_060 Hb_027346_010 Hb_027346_010 Hb_000574_400--Hb_027346_010 Hb_001205_230 Hb_001205_230 Hb_000574_400--Hb_001205_230 Hb_011671_410 Hb_011671_410 Hb_000574_400--Hb_011671_410 Hb_000130_490 Hb_000130_490 Hb_005486_030--Hb_000130_490 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_002316_160 Hb_002316_160 Hb_005486_030--Hb_002316_160 Hb_009767_080 Hb_009767_080 Hb_005486_030--Hb_009767_080 Hb_009898_010 Hb_009898_010 Hb_005486_030--Hb_009898_010 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_009382_010 Hb_009382_010 Hb_000603_110--Hb_009382_010 Hb_001085_060 Hb_001085_060 Hb_000603_110--Hb_001085_060 Hb_000603_110--Hb_002316_150 Hb_007441_220 Hb_007441_220 Hb_000603_110--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_000603_110--Hb_000041_100 Hb_008554_130 Hb_008554_130 Hb_000603_110--Hb_008554_130 Hb_009486_060--Hb_001205_230 Hb_008221_180 Hb_008221_180 Hb_009486_060--Hb_008221_180 Hb_009486_060--Hb_027346_010 Hb_009486_060--Hb_002234_170 Hb_001671_010 Hb_001671_010 Hb_009486_060--Hb_001671_010 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_000270_670 Hb_000270_670 Hb_002316_150--Hb_000270_670 Hb_002316_150--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_004228_020 Hb_004228_020 Hb_001268_380--Hb_004228_020 Hb_001268_380--Hb_009767_080 Hb_000890_050 Hb_000890_050 Hb_001268_380--Hb_000890_050 Hb_002780_010 Hb_002780_010 Hb_001268_380--Hb_002780_010 Hb_001268_380--Hb_005486_030 Hb_002007_160 Hb_002007_160 Hb_001268_380--Hb_002007_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6195 3.09314 1.02056 0.615268 1.88133 1.99552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07375 2.0556 3.08277 1.34127 3.78703

CAGE analysis