Hb_001473_040

Information

Type -
Description -
Location Contig1473: 32784-41026
Sequence    

Annotation

kegg
ID rcu:RCOM_1021480
description serine/threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002518140.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID B9RWM1
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1021480 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11978: 34774-35278 , PASA_asmbl_11979: 38582-38971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_040 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_003929_130 0.1139103707 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
3 Hb_005188_020 0.1237192763 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
4 Hb_001825_060 0.1263130655 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
5 Hb_000230_500 0.1265827049 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
6 Hb_012573_040 0.1308160641 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
7 Hb_002217_020 0.1318775831 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
8 Hb_002835_180 0.1358944538 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001856_200 0.1364436907 - - Esterase PIR7B, putative [Ricinus communis]
10 Hb_002043_030 0.1381446866 - - hypothetical protein RCOM_1486170 [Ricinus communis]
11 Hb_000529_170 0.1435304812 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
12 Hb_000164_020 0.1438349807 - - actin binding protein, putative [Ricinus communis]
13 Hb_001648_030 0.1445838218 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
14 Hb_002704_070 0.1447713633 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
15 Hb_012107_060 0.1485776795 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
16 Hb_004208_030 0.1494590728 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
17 Hb_004223_030 0.1505398667 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
18 Hb_003371_090 0.1507933447 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
19 Hb_000465_230 0.1509961757 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
20 Hb_001314_070 0.1523482646 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001473_040 Hb_001473_040 Hb_003929_130 Hb_003929_130 Hb_001473_040--Hb_003929_130 Hb_005188_020 Hb_005188_020 Hb_001473_040--Hb_005188_020 Hb_001825_060 Hb_001825_060 Hb_001473_040--Hb_001825_060 Hb_000230_500 Hb_000230_500 Hb_001473_040--Hb_000230_500 Hb_012573_040 Hb_012573_040 Hb_001473_040--Hb_012573_040 Hb_002217_020 Hb_002217_020 Hb_001473_040--Hb_002217_020 Hb_002391_310 Hb_002391_310 Hb_003929_130--Hb_002391_310 Hb_000976_310 Hb_000976_310 Hb_003929_130--Hb_000976_310 Hb_005725_210 Hb_005725_210 Hb_003929_130--Hb_005725_210 Hb_000696_150 Hb_000696_150 Hb_003929_130--Hb_000696_150 Hb_000189_560 Hb_000189_560 Hb_003929_130--Hb_000189_560 Hb_005188_020--Hb_000230_500 Hb_030565_030 Hb_030565_030 Hb_005188_020--Hb_030565_030 Hb_000041_100 Hb_000041_100 Hb_005188_020--Hb_000041_100 Hb_004374_070 Hb_004374_070 Hb_005188_020--Hb_004374_070 Hb_001318_270 Hb_001318_270 Hb_005188_020--Hb_001318_270 Hb_003371_090 Hb_003371_090 Hb_005188_020--Hb_003371_090 Hb_001856_200 Hb_001856_200 Hb_001825_060--Hb_001856_200 Hb_001825_060--Hb_002217_020 Hb_001825_060--Hb_012573_040 Hb_012107_060 Hb_012107_060 Hb_001825_060--Hb_012107_060 Hb_141990_040 Hb_141990_040 Hb_001825_060--Hb_141990_040 Hb_000465_230 Hb_000465_230 Hb_001825_060--Hb_000465_230 Hb_000230_500--Hb_000041_100 Hb_000230_500--Hb_003371_090 Hb_002988_040 Hb_002988_040 Hb_000230_500--Hb_002988_040 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_000398_100 Hb_000398_100 Hb_012573_040--Hb_000398_100 Hb_000173_470 Hb_000173_470 Hb_012573_040--Hb_000173_470 Hb_000951_130 Hb_000951_130 Hb_012573_040--Hb_000951_130 Hb_000270_120 Hb_000270_120 Hb_012573_040--Hb_000270_120 Hb_004916_010 Hb_004916_010 Hb_012573_040--Hb_004916_010 Hb_022250_060 Hb_022250_060 Hb_002217_020--Hb_022250_060 Hb_007317_010 Hb_007317_010 Hb_002217_020--Hb_007317_010 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_136509_010 Hb_136509_010 Hb_002217_020--Hb_136509_010 Hb_002217_020--Hb_001856_200 Hb_000164_020 Hb_000164_020 Hb_002217_020--Hb_000164_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.57895 2.71957 1.26946 0.556106 0.449966 0.63412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43877 2.21771 2.6388 1.34961 1.60218

CAGE analysis