Hb_001700_010

Information

Type -
Description -
Location Contig1700: 5639-13869
Sequence    

Annotation

kegg
ID tcc:TCM_037141
description P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1
nr
ID XP_012077454.1
description PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
swissprot
ID O81004
description GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2
trembl
ID A0A067KGX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07789 PE=3 SV=1
Gene Ontology
ID GO:0005525
description gtp-binding protein at2g22870-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15900: 5789-13670 , PASA_asmbl_15901: 5992-13897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001700_010 0.0 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
2 Hb_000103_480 0.0710721671 - - -
3 Hb_000184_170 0.0750279883 - - hypothetical protein RCOM_1213430 [Ricinus communis]
4 Hb_000869_020 0.0810817082 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
5 Hb_008165_060 0.0813618014 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
6 Hb_001322_140 0.0818843223 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
7 Hb_000205_190 0.085714136 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
8 Hb_004970_190 0.0860696652 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_001975_090 0.0869669419 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
10 Hb_003513_010 0.0895252341 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
11 Hb_012022_150 0.09039151 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
12 Hb_004052_080 0.0952936611 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000866_260 0.0967087551 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
14 Hb_000804_040 0.0971316113 - - protein with unknown function [Ricinus communis]
15 Hb_007007_120 0.0985806852 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
16 Hb_003531_080 0.1003803089 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
17 Hb_022693_140 0.1011212946 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
18 Hb_000137_040 0.1014130872 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
19 Hb_002235_250 0.1040456761 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
20 Hb_002876_220 0.1041960578 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]

Gene co-expression network

sample Hb_001700_010 Hb_001700_010 Hb_000103_480 Hb_000103_480 Hb_001700_010--Hb_000103_480 Hb_000184_170 Hb_000184_170 Hb_001700_010--Hb_000184_170 Hb_000869_020 Hb_000869_020 Hb_001700_010--Hb_000869_020 Hb_008165_060 Hb_008165_060 Hb_001700_010--Hb_008165_060 Hb_001322_140 Hb_001322_140 Hb_001700_010--Hb_001322_140 Hb_000205_190 Hb_000205_190 Hb_001700_010--Hb_000205_190 Hb_001472_060 Hb_001472_060 Hb_000103_480--Hb_001472_060 Hb_004097_130 Hb_004097_130 Hb_000103_480--Hb_004097_130 Hb_000103_530 Hb_000103_530 Hb_000103_480--Hb_000103_530 Hb_000103_480--Hb_008165_060 Hb_000103_480--Hb_001322_140 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000346_060 Hb_000346_060 Hb_000184_170--Hb_000346_060 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_022693_140 Hb_022693_140 Hb_000184_170--Hb_022693_140 Hb_001279_030 Hb_001279_030 Hb_000184_170--Hb_001279_030 Hb_003513_010 Hb_003513_010 Hb_000869_020--Hb_003513_010 Hb_004970_190 Hb_004970_190 Hb_000869_020--Hb_004970_190 Hb_004052_080 Hb_004052_080 Hb_000869_020--Hb_004052_080 Hb_003861_060 Hb_003861_060 Hb_000869_020--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080 Hb_008165_060--Hb_000205_190 Hb_001158_070 Hb_001158_070 Hb_008165_060--Hb_001158_070 Hb_000329_320 Hb_000329_320 Hb_008165_060--Hb_000329_320 Hb_000917_060 Hb_000917_060 Hb_008165_060--Hb_000917_060 Hb_005269_070 Hb_005269_070 Hb_008165_060--Hb_005269_070 Hb_000804_040 Hb_000804_040 Hb_001322_140--Hb_000804_040 Hb_012022_150 Hb_012022_150 Hb_001322_140--Hb_012022_150 Hb_001322_140--Hb_000205_190 Hb_001322_140--Hb_000184_170 Hb_000224_160 Hb_000224_160 Hb_001322_140--Hb_000224_160 Hb_000205_190--Hb_001158_070 Hb_000205_190--Hb_004970_190 Hb_000205_190--Hb_000804_040 Hb_001001_080 Hb_001001_080 Hb_000205_190--Hb_001001_080 Hb_000205_190--Hb_007007_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5925 6.68466 16.4406 8.25015 6.66277 12.6118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.87219 11.4048 13.7832 7.06475 16.6109

CAGE analysis