Hb_000103_530

Information

Type -
Description -
Location Contig103: 429327-435060
Sequence    

Annotation

kegg
ID rcu:RCOM_0910730
description hypothetical protein
nr
ID XP_012069729.1
description PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02249 PE=4 SV=1
Gene Ontology
ID GO:0009570
description PREDICTED: uncharacterized protein LOC105632061

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01246: 429602-433143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_530 0.0 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
2 Hb_000103_480 0.0952702281 - - -
3 Hb_007002_020 0.1023862916 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
4 Hb_001700_010 0.1083783663 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
5 Hb_004097_130 0.1150795029 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
6 Hb_012305_100 0.1193188892 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
7 Hb_004583_010 0.1210345942 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
8 Hb_000108_050 0.1228757843 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
9 Hb_137222_020 0.1251258508 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
10 Hb_171215_010 0.1263805192 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_002876_220 0.1277737862 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
12 Hb_001828_040 0.1293922858 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
13 Hb_000802_130 0.1311064402 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
14 Hb_012573_050 0.1313932374 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
15 Hb_000184_170 0.1313987156 - - hypothetical protein RCOM_1213430 [Ricinus communis]
16 Hb_003363_070 0.1322559629 - - -
17 Hb_000802_140 0.1325305011 - - hypothetical protein B456_011G045700 [Gossypium raimondii]
18 Hb_000608_170 0.132592986 - - F23N19.4 [Arabidopsis thaliana]
19 Hb_002769_030 0.1365468695 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
20 Hb_001472_060 0.1372707535 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_530 Hb_000103_530 Hb_000103_480 Hb_000103_480 Hb_000103_530--Hb_000103_480 Hb_007002_020 Hb_007002_020 Hb_000103_530--Hb_007002_020 Hb_001700_010 Hb_001700_010 Hb_000103_530--Hb_001700_010 Hb_004097_130 Hb_004097_130 Hb_000103_530--Hb_004097_130 Hb_012305_100 Hb_012305_100 Hb_000103_530--Hb_012305_100 Hb_004583_010 Hb_004583_010 Hb_000103_530--Hb_004583_010 Hb_000103_480--Hb_001700_010 Hb_001472_060 Hb_001472_060 Hb_000103_480--Hb_001472_060 Hb_000103_480--Hb_004097_130 Hb_008165_060 Hb_008165_060 Hb_000103_480--Hb_008165_060 Hb_001322_140 Hb_001322_140 Hb_000103_480--Hb_001322_140 Hb_001287_040 Hb_001287_040 Hb_007002_020--Hb_001287_040 Hb_006132_090 Hb_006132_090 Hb_007002_020--Hb_006132_090 Hb_001900_140 Hb_001900_140 Hb_007002_020--Hb_001900_140 Hb_000003_780 Hb_000003_780 Hb_007002_020--Hb_000003_780 Hb_000811_070 Hb_000811_070 Hb_007002_020--Hb_000811_070 Hb_007975_060 Hb_007975_060 Hb_007002_020--Hb_007975_060 Hb_000184_170 Hb_000184_170 Hb_001700_010--Hb_000184_170 Hb_000869_020 Hb_000869_020 Hb_001700_010--Hb_000869_020 Hb_001700_010--Hb_008165_060 Hb_001700_010--Hb_001322_140 Hb_000205_190 Hb_000205_190 Hb_001700_010--Hb_000205_190 Hb_004097_130--Hb_001472_060 Hb_003531_080 Hb_003531_080 Hb_004097_130--Hb_003531_080 Hb_154471_020 Hb_154471_020 Hb_004097_130--Hb_154471_020 Hb_000635_090 Hb_000635_090 Hb_004097_130--Hb_000635_090 Hb_003688_040 Hb_003688_040 Hb_004097_130--Hb_003688_040 Hb_021732_010 Hb_021732_010 Hb_012305_100--Hb_021732_010 Hb_156850_100 Hb_156850_100 Hb_012305_100--Hb_156850_100 Hb_001022_030 Hb_001022_030 Hb_012305_100--Hb_001022_030 Hb_005539_010 Hb_005539_010 Hb_012305_100--Hb_005539_010 Hb_003728_100 Hb_003728_100 Hb_012305_100--Hb_003728_100 Hb_000802_130 Hb_000802_130 Hb_012305_100--Hb_000802_130 Hb_007533_040 Hb_007533_040 Hb_004583_010--Hb_007533_040 Hb_001629_030 Hb_001629_030 Hb_004583_010--Hb_001629_030 Hb_008421_020 Hb_008421_020 Hb_004583_010--Hb_008421_020 Hb_004108_160 Hb_004108_160 Hb_004583_010--Hb_004108_160 Hb_003153_010 Hb_003153_010 Hb_004583_010--Hb_003153_010 Hb_001818_100 Hb_001818_100 Hb_004583_010--Hb_001818_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.38601 4.33537 18.6195 9.43571 3.68343 11.7064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.26574 7.41692 15.9741 5.7914 20.0217

CAGE analysis