Hb_021732_010

Information

Type -
Description -
Location Contig21732: 4597-24542
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07780g
description POPTRDRAFT_831870; biotin carboxylase precursor family protein
nr
ID AHJ61046.1
description biotin carboxylase [Vernicia fordii]
swissprot
ID B9HBA8
description Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 PE=2 SV=1
trembl
ID W8E782
description Biotin carboxylase OS=Vernicia fordii PE=2 SV=1
Gene Ontology
ID GO:0004075
description biotin carboxylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22448: 4675-24481 , PASA_asmbl_22449: 5445-24481 , PASA_asmbl_22452: 23515-23704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021732_010 0.0 - - biotin carboxylase [Vernicia fordii]
2 Hb_000284_130 0.0811396703 - - sodium-bile acid cotransporter, putative [Ricinus communis]
3 Hb_012305_100 0.0852015235 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
4 Hb_000003_780 0.1094743621 - - hexokinase [Manihot esculenta]
5 Hb_000802_130 0.1122766109 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
6 Hb_001541_110 0.118342266 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_002027_320 0.1197050372 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
8 Hb_001102_050 0.1208468455 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
9 Hb_000061_150 0.1240558505 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
10 Hb_003728_100 0.1247419527 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
11 Hb_000207_300 0.124951446 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
12 Hb_021650_010 0.1256289469 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
13 Hb_000088_190 0.1262087919 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001022_030 0.1280088223 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
15 Hb_000181_060 0.1291520451 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
16 Hb_005162_110 0.1293497226 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
17 Hb_001587_180 0.1301458868 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
18 Hb_004994_080 0.1304162459 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_012438_030 0.1314031492 - - PREDICTED: protein sym-1 [Jatropha curcas]
20 Hb_012545_060 0.1314636826 - - PREDICTED: uncharacterized protein LOC103986927 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_021732_010 Hb_021732_010 Hb_000284_130 Hb_000284_130 Hb_021732_010--Hb_000284_130 Hb_012305_100 Hb_012305_100 Hb_021732_010--Hb_012305_100 Hb_000003_780 Hb_000003_780 Hb_021732_010--Hb_000003_780 Hb_000802_130 Hb_000802_130 Hb_021732_010--Hb_000802_130 Hb_001541_110 Hb_001541_110 Hb_021732_010--Hb_001541_110 Hb_002027_320 Hb_002027_320 Hb_021732_010--Hb_002027_320 Hb_006787_090 Hb_006787_090 Hb_000284_130--Hb_006787_090 Hb_004994_080 Hb_004994_080 Hb_000284_130--Hb_004994_080 Hb_000181_060 Hb_000181_060 Hb_000284_130--Hb_000181_060 Hb_000364_100 Hb_000364_100 Hb_000284_130--Hb_000364_100 Hb_003752_070 Hb_003752_070 Hb_000284_130--Hb_003752_070 Hb_156850_100 Hb_156850_100 Hb_012305_100--Hb_156850_100 Hb_001022_030 Hb_001022_030 Hb_012305_100--Hb_001022_030 Hb_005539_010 Hb_005539_010 Hb_012305_100--Hb_005539_010 Hb_003728_100 Hb_003728_100 Hb_012305_100--Hb_003728_100 Hb_012305_100--Hb_000802_130 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_005946_040 Hb_005946_040 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_007002_020 Hb_007002_020 Hb_000003_780--Hb_007002_020 Hb_001900_140 Hb_001900_140 Hb_000003_780--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000003_780--Hb_001587_180 Hb_000613_120 Hb_000613_120 Hb_000802_130--Hb_000613_120 Hb_021650_010 Hb_021650_010 Hb_000802_130--Hb_021650_010 Hb_001430_020 Hb_001430_020 Hb_000802_130--Hb_001430_020 Hb_004109_260 Hb_004109_260 Hb_000802_130--Hb_004109_260 Hb_011861_050 Hb_011861_050 Hb_000802_130--Hb_011861_050 Hb_102948_010 Hb_102948_010 Hb_000802_130--Hb_102948_010 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_001541_110--Hb_000003_780 Hb_001541_110--Hb_001587_180 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_007263_010 Hb_007263_010 Hb_002027_320--Hb_007263_010 Hb_000392_450 Hb_000392_450 Hb_002027_320--Hb_000392_450 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_002027_320--Hb_000181_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3939 9.34554 81.3193 22.4965 17.9196 16.1275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5744 14.816 23.2207 18.7864 48.1235

CAGE analysis