Hb_002007_190

Information

Type -
Description -
Location Contig2007: 129063-130469
Sequence    

Annotation

kegg
ID rcu:RCOM_1432220
description hypothetical protein
nr
ID XP_002512402.1
description hypothetical protein RCOM_1432220 [Ricinus communis]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID B9RF83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1432220 PE=4 SV=1
Gene Ontology
ID GO:0031625
description cullin-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_190 0.0 - - hypothetical protein RCOM_1432220 [Ricinus communis]
2 Hb_007645_080 0.1947293783 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
3 Hb_001364_030 0.2005359755 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
4 Hb_000260_310 0.2028851906 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
5 Hb_001373_180 0.2066994012 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
6 Hb_000349_290 0.2101546235 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
7 Hb_000574_350 0.2106553126 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
8 Hb_000419_060 0.2107099411 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
9 Hb_004375_150 0.2204156316 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
10 Hb_010608_050 0.2204825024 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
11 Hb_000836_080 0.2213748208 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
12 Hb_001969_090 0.2214621398 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
13 Hb_087596_010 0.2226656144 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
14 Hb_025557_030 0.2233646192 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
15 Hb_075807_010 0.2234258722 - - PREDICTED: uncharacterized protein LOC105631775 [Jatropha curcas]
16 Hb_004306_100 0.2234992046 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
17 Hb_000369_020 0.2236951714 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
18 Hb_003185_050 0.2244332389 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
19 Hb_178968_130 0.2248254267 - - unknown [Populus trichocarpa x Populus deltoides]
20 Hb_000366_090 0.225710414 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002007_190 Hb_002007_190 Hb_007645_080 Hb_007645_080 Hb_002007_190--Hb_007645_080 Hb_001364_030 Hb_001364_030 Hb_002007_190--Hb_001364_030 Hb_000260_310 Hb_000260_310 Hb_002007_190--Hb_000260_310 Hb_001373_180 Hb_001373_180 Hb_002007_190--Hb_001373_180 Hb_000349_290 Hb_000349_290 Hb_002007_190--Hb_000349_290 Hb_000574_350 Hb_000574_350 Hb_002007_190--Hb_000574_350 Hb_003185_050 Hb_003185_050 Hb_007645_080--Hb_003185_050 Hb_002235_280 Hb_002235_280 Hb_007645_080--Hb_002235_280 Hb_019654_090 Hb_019654_090 Hb_007645_080--Hb_019654_090 Hb_000072_080 Hb_000072_080 Hb_007645_080--Hb_000072_080 Hb_000366_090 Hb_000366_090 Hb_007645_080--Hb_000366_090 Hb_007645_080--Hb_000349_290 Hb_000363_140 Hb_000363_140 Hb_001364_030--Hb_000363_140 Hb_005701_030 Hb_005701_030 Hb_001364_030--Hb_005701_030 Hb_033772_050 Hb_033772_050 Hb_001364_030--Hb_033772_050 Hb_001364_030--Hb_000260_310 Hb_016604_020 Hb_016604_020 Hb_001364_030--Hb_016604_020 Hb_009486_190 Hb_009486_190 Hb_001364_030--Hb_009486_190 Hb_000264_020 Hb_000264_020 Hb_000260_310--Hb_000264_020 Hb_003504_020 Hb_003504_020 Hb_000260_310--Hb_003504_020 Hb_000260_310--Hb_019654_090 Hb_002053_060 Hb_002053_060 Hb_000260_310--Hb_002053_060 Hb_000373_180 Hb_000373_180 Hb_000260_310--Hb_000373_180 Hb_001514_230 Hb_001514_230 Hb_000260_310--Hb_001514_230 Hb_013607_040 Hb_013607_040 Hb_001373_180--Hb_013607_040 Hb_000189_140 Hb_000189_140 Hb_001373_180--Hb_000189_140 Hb_004846_070 Hb_004846_070 Hb_001373_180--Hb_004846_070 Hb_000723_080 Hb_000723_080 Hb_001373_180--Hb_000723_080 Hb_000002_050 Hb_000002_050 Hb_001373_180--Hb_000002_050 Hb_001373_180--Hb_002235_280 Hb_001565_080 Hb_001565_080 Hb_000349_290--Hb_001565_080 Hb_000349_290--Hb_003185_050 Hb_000215_060 Hb_000215_060 Hb_000349_290--Hb_000215_060 Hb_000363_480 Hb_000363_480 Hb_000349_290--Hb_000363_480 Hb_000905_180 Hb_000905_180 Hb_000349_290--Hb_000905_180 Hb_011173_050 Hb_011173_050 Hb_000349_290--Hb_011173_050 Hb_001338_040 Hb_001338_040 Hb_000574_350--Hb_001338_040 Hb_000019_130 Hb_000019_130 Hb_000574_350--Hb_000019_130 Hb_000935_050 Hb_000935_050 Hb_000574_350--Hb_000935_050 Hb_000019_060 Hb_000019_060 Hb_000574_350--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_000574_350--Hb_027472_170 Hb_007075_050 Hb_007075_050 Hb_000574_350--Hb_007075_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187572 1.28124 0.030189 0.224919 0.105653 0.846828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30155 1.97802 1.69385 0.30597 0.536146

CAGE analysis