Hb_001514_230

Information

Type -
Description -
Location Contig1514: 226138-231289
Sequence    

Annotation

kegg
ID rcu:RCOM_1588230
description RNA binding protein, putative
nr
ID XP_012068263.1
description PREDICTED: pumilio homolog 12-like [Jatropha curcas]
swissprot
ID Q9LVC3
description Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
trembl
ID A0A067LC35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16061 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pumilio homolog 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_230 0.0 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
2 Hb_064997_010 0.1325975621 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
3 Hb_000260_310 0.1421461866 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
4 Hb_000377_060 0.1523427321 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_138585_060 0.1525741646 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
6 Hb_001638_020 0.1552094138 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_016604_020 0.1553526304 - - -
8 Hb_000482_010 0.1581767077 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
9 Hb_019654_090 0.1584710749 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
10 Hb_000395_240 0.1589504909 - - hypothetical protein CICLE_v10010039mg [Citrus clementina]
11 Hb_168319_030 0.1609688137 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_011381_100 0.1646524945 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
13 Hb_005841_050 0.1647597229 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
14 Hb_000193_290 0.1663896625 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
15 Hb_004375_150 0.1666458166 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
16 Hb_004128_180 0.1697793104 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_025214_130 0.1701642757 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
18 Hb_000997_400 0.1708779422 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
19 Hb_029866_040 0.1711250062 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
20 Hb_003018_190 0.171478587 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001514_230 Hb_001514_230 Hb_064997_010 Hb_064997_010 Hb_001514_230--Hb_064997_010 Hb_000260_310 Hb_000260_310 Hb_001514_230--Hb_000260_310 Hb_000377_060 Hb_000377_060 Hb_001514_230--Hb_000377_060 Hb_138585_060 Hb_138585_060 Hb_001514_230--Hb_138585_060 Hb_001638_020 Hb_001638_020 Hb_001514_230--Hb_001638_020 Hb_016604_020 Hb_016604_020 Hb_001514_230--Hb_016604_020 Hb_001153_220 Hb_001153_220 Hb_064997_010--Hb_001153_220 Hb_003018_190 Hb_003018_190 Hb_064997_010--Hb_003018_190 Hb_000836_070 Hb_000836_070 Hb_064997_010--Hb_000836_070 Hb_000997_400 Hb_000997_400 Hb_064997_010--Hb_000997_400 Hb_008311_010 Hb_008311_010 Hb_064997_010--Hb_008311_010 Hb_025214_130 Hb_025214_130 Hb_064997_010--Hb_025214_130 Hb_000264_020 Hb_000264_020 Hb_000260_310--Hb_000264_020 Hb_003504_020 Hb_003504_020 Hb_000260_310--Hb_003504_020 Hb_019654_090 Hb_019654_090 Hb_000260_310--Hb_019654_090 Hb_002053_060 Hb_002053_060 Hb_000260_310--Hb_002053_060 Hb_000373_180 Hb_000373_180 Hb_000260_310--Hb_000373_180 Hb_001109_020 Hb_001109_020 Hb_000377_060--Hb_001109_020 Hb_029866_040 Hb_029866_040 Hb_000377_060--Hb_029866_040 Hb_011381_100 Hb_011381_100 Hb_000377_060--Hb_011381_100 Hb_000377_060--Hb_003018_190 Hb_003632_010 Hb_003632_010 Hb_000377_060--Hb_003632_010 Hb_000377_060--Hb_008311_010 Hb_021409_030 Hb_021409_030 Hb_138585_060--Hb_021409_030 Hb_000072_080 Hb_000072_080 Hb_138585_060--Hb_000072_080 Hb_000258_170 Hb_000258_170 Hb_138585_060--Hb_000258_170 Hb_001141_030 Hb_001141_030 Hb_138585_060--Hb_001141_030 Hb_007100_030 Hb_007100_030 Hb_138585_060--Hb_007100_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010 Hb_001143_080 Hb_001143_080 Hb_001638_020--Hb_001143_080 Hb_003398_120 Hb_003398_120 Hb_001638_020--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_001638_020--Hb_001998_050 Hb_005841_050 Hb_005841_050 Hb_001638_020--Hb_005841_050 Hb_001248_080 Hb_001248_080 Hb_001638_020--Hb_001248_080 Hb_001638_020--Hb_001141_030 Hb_016604_020--Hb_002053_060 Hb_002609_280 Hb_002609_280 Hb_016604_020--Hb_002609_280 Hb_003216_100 Hb_003216_100 Hb_016604_020--Hb_003216_100 Hb_002182_060 Hb_002182_060 Hb_016604_020--Hb_002182_060 Hb_003992_080 Hb_003992_080 Hb_016604_020--Hb_003992_080 Hb_000264_090 Hb_000264_090 Hb_016604_020--Hb_000264_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.388136 0.278091 0.0731993 0.256059 0.141077 0.49739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.308035 1.09053 0.956584 0.0677019 0.0507241

CAGE analysis