Hb_000264_090

Information

Type -
Description -
Location Contig264: 94384-99993
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04030g
description POPTRDRAFT_197301; hypothetical protein
nr
ID XP_012091571.1
description PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID A0A067JDV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21414 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_090 0.0 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
2 Hb_002609_280 0.0795080564 - - villin 1-4, putative [Ricinus communis]
3 Hb_001998_050 0.0795404098 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
4 Hb_002925_030 0.0818215914 - - 40S ribosomal protein S16B [Hevea brasiliensis]
5 Hb_155764_020 0.0824735575 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
6 Hb_003398_120 0.0827828462 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
7 Hb_001248_080 0.0834845066 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
8 Hb_000363_480 0.0856646863 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
9 Hb_002182_060 0.0880219744 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
10 Hb_000227_230 0.0881304499 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
11 Hb_000349_290 0.093371183 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
12 Hb_008173_090 0.0944758768 - - glutathione peroxidase, putative [Ricinus communis]
13 Hb_003656_070 0.0956316084 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
14 Hb_001143_080 0.0960004144 - - PREDICTED: F-box protein 7 [Jatropha curcas]
15 Hb_002375_090 0.0962056179 - - -
16 Hb_001638_020 0.0963329282 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_011311_010 0.0975633882 - - 60S ribosomal protein L27C [Hevea brasiliensis]
18 Hb_000215_060 0.0976436192 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
19 Hb_000563_240 0.0977333286 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
20 Hb_009265_090 0.0978365286 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_090 Hb_000264_090 Hb_002609_280 Hb_002609_280 Hb_000264_090--Hb_002609_280 Hb_001998_050 Hb_001998_050 Hb_000264_090--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000264_090--Hb_002925_030 Hb_155764_020 Hb_155764_020 Hb_000264_090--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_000264_090--Hb_003398_120 Hb_001248_080 Hb_001248_080 Hb_000264_090--Hb_001248_080 Hb_000196_090 Hb_000196_090 Hb_002609_280--Hb_000196_090 Hb_007101_130 Hb_007101_130 Hb_002609_280--Hb_007101_130 Hb_007672_010 Hb_007672_010 Hb_002609_280--Hb_007672_010 Hb_000030_100 Hb_000030_100 Hb_002609_280--Hb_000030_100 Hb_002182_060 Hb_002182_060 Hb_002609_280--Hb_002182_060 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_002925_030--Hb_003398_120 Hb_002925_030--Hb_000227_230 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002713_070 Hb_002713_070 Hb_002925_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_000563_240 Hb_000563_240 Hb_155764_020--Hb_000563_240 Hb_155764_020--Hb_001248_080 Hb_001268_140 Hb_001268_140 Hb_155764_020--Hb_001268_140 Hb_000099_060 Hb_000099_060 Hb_155764_020--Hb_000099_060 Hb_000134_330 Hb_000134_330 Hb_155764_020--Hb_000134_330 Hb_001300_270 Hb_001300_270 Hb_155764_020--Hb_001300_270 Hb_003398_120--Hb_001248_080 Hb_003398_120--Hb_000227_230 Hb_003398_120--Hb_001998_050 Hb_148930_010 Hb_148930_010 Hb_003398_120--Hb_148930_010 Hb_003398_120--Hb_011311_010 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001248_080--Hb_001998_050 Hb_001248_080--Hb_000563_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76721 5.38868 2.08802 2.68315 5.25568 6.6804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6855 21.4847 10.7383 6.25227 1.60686

CAGE analysis