Hb_002609_280

Information

Type -
Description -
Location Contig2609: 213052-224616
Sequence    

Annotation

kegg
ID rcu:RCOM_0612050
description villin 1-4, putative
nr
ID XP_002525631.1
description villin 1-4, putative [Ricinus communis]
swissprot
ID O81643
description Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2
trembl
ID B9SI12
description Villin 1-4, putative OS=Ricinus communis GN=RCOM_0612050 PE=4 SV=1
Gene Ontology
ID GO:0003779
description villin-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27213: 213201-219399 , PASA_asmbl_27214: 216969-219399 , PASA_asmbl_27215: 213201-220004 , PASA_asmbl_27216: 213201-215018 , PASA_asmbl_27217: 216969-220053 , PASA_asmbl_27218: 220589-224584
cDNA
(Sanger)
(ID:Location)		 042_A24.ab1: 213201-215018

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_280 0.0 - - villin 1-4, putative [Ricinus communis]
2 Hb_000264_090 0.0795080564 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
3 Hb_000196_090 0.0969331067 - - axonemal dynein light chain, putative [Ricinus communis]
4 Hb_007101_130 0.0988009165 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007672_010 0.0991722219 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
6 Hb_000030_100 0.0992058891 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
7 Hb_002182_060 0.0995259855 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
8 Hb_001638_020 0.0998105061 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_003398_120 0.1029934665 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
10 Hb_000227_230 0.1030972579 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
11 Hb_001998_050 0.1050940891 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
12 Hb_007943_090 0.1066592795 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
13 Hb_008289_060 0.1081243929 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
14 Hb_001143_080 0.1090769906 - - PREDICTED: F-box protein 7 [Jatropha curcas]
15 Hb_001442_020 0.1101507419 - - unknown [Populus trichocarpa]
16 Hb_000099_060 0.1119090398 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
17 Hb_010172_070 0.1120125409 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
18 Hb_011465_040 0.112148542 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
19 Hb_000200_100 0.1123769764 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
20 Hb_003216_100 0.1126956354 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]

Gene co-expression network

sample Hb_002609_280 Hb_002609_280 Hb_000264_090 Hb_000264_090 Hb_002609_280--Hb_000264_090 Hb_000196_090 Hb_000196_090 Hb_002609_280--Hb_000196_090 Hb_007101_130 Hb_007101_130 Hb_002609_280--Hb_007101_130 Hb_007672_010 Hb_007672_010 Hb_002609_280--Hb_007672_010 Hb_000030_100 Hb_000030_100 Hb_002609_280--Hb_000030_100 Hb_002182_060 Hb_002182_060 Hb_002609_280--Hb_002182_060 Hb_001998_050 Hb_001998_050 Hb_000264_090--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000264_090--Hb_002925_030 Hb_155764_020 Hb_155764_020 Hb_000264_090--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_000264_090--Hb_003398_120 Hb_001248_080 Hb_001248_080 Hb_000264_090--Hb_001248_080 Hb_002794_030 Hb_002794_030 Hb_000196_090--Hb_002794_030 Hb_002540_030 Hb_002540_030 Hb_000196_090--Hb_002540_030 Hb_000196_090--Hb_007672_010 Hb_000261_460 Hb_000261_460 Hb_000196_090--Hb_000261_460 Hb_001329_210 Hb_001329_210 Hb_000196_090--Hb_001329_210 Hb_007101_130--Hb_007672_010 Hb_003018_200 Hb_003018_200 Hb_007101_130--Hb_003018_200 Hb_027472_180 Hb_027472_180 Hb_007101_130--Hb_027472_180 Hb_008453_090 Hb_008453_090 Hb_007101_130--Hb_008453_090 Hb_001184_110 Hb_001184_110 Hb_007101_130--Hb_001184_110 Hb_000376_050 Hb_000376_050 Hb_007101_130--Hb_000376_050 Hb_007672_010--Hb_000376_050 Hb_021650_030 Hb_021650_030 Hb_007672_010--Hb_021650_030 Hb_000056_340 Hb_000056_340 Hb_007672_010--Hb_000056_340 Hb_002890_280 Hb_002890_280 Hb_007672_010--Hb_002890_280 Hb_002078_450 Hb_002078_450 Hb_007672_010--Hb_002078_450 Hb_008289_060 Hb_008289_060 Hb_000030_100--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_000030_100--Hb_011465_040 Hb_002918_200 Hb_002918_200 Hb_000030_100--Hb_002918_200 Hb_000089_160 Hb_000089_160 Hb_000030_100--Hb_000089_160 Hb_003226_280 Hb_003226_280 Hb_000030_100--Hb_003226_280 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_008173_090 Hb_008173_090 Hb_002182_060--Hb_008173_090 Hb_000099_060 Hb_000099_060 Hb_002182_060--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_002182_060--Hb_000970_010 Hb_000200_100 Hb_000200_100 Hb_002182_060--Hb_000200_100 Hb_003106_050 Hb_003106_050 Hb_002182_060--Hb_003106_050 Hb_002301_140 Hb_002301_140 Hb_002182_060--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.9717 30.0707 5.754 19.2452 52.8638 46.3387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.3185 140.368 84.1743 39.86 8.11526

CAGE analysis