Hb_000574_350

Information

Type -
Description -
Location Contig574: 325258-327276
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02110g
description POPTRDRAFT_576004; hypothetical protein
nr
ID XP_012081072.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
swissprot
ID Q9SY02
description Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
trembl
ID A0A067K294
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17483 PE=4 SV=1
Gene Ontology
ID GO:0003824
description pentatricopeptide repeat-containing protein at4g02750-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49559: 324798-324932 , PASA_asmbl_49562: 326973-327275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_350 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
2 Hb_001338_040 0.0877470679 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000019_130 0.0894068457 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
4 Hb_000935_050 0.095885344 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
5 Hb_000019_060 0.1007538011 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
6 Hb_027472_170 0.1009076667 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
7 Hb_007075_050 0.1011355556 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_025557_030 0.1016531363 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
9 Hb_119600_040 0.1020161626 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
10 Hb_007747_200 0.102094162 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
11 Hb_000836_080 0.1074824464 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
12 Hb_000317_280 0.1105574155 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
13 Hb_005686_030 0.1120791737 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
14 Hb_000307_030 0.1139017593 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
15 Hb_001314_020 0.1140264305 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
16 Hb_004128_180 0.1192653244 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_019654_090 0.1200327884 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
18 Hb_004807_030 0.1207498182 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
19 Hb_000033_020 0.1212436588 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_168319_030 0.1223268723 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]

Gene co-expression network

sample Hb_000574_350 Hb_000574_350 Hb_001338_040 Hb_001338_040 Hb_000574_350--Hb_001338_040 Hb_000019_130 Hb_000019_130 Hb_000574_350--Hb_000019_130 Hb_000935_050 Hb_000935_050 Hb_000574_350--Hb_000935_050 Hb_000019_060 Hb_000019_060 Hb_000574_350--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_000574_350--Hb_027472_170 Hb_007075_050 Hb_007075_050 Hb_000574_350--Hb_007075_050 Hb_000317_280 Hb_000317_280 Hb_001338_040--Hb_000317_280 Hb_002056_060 Hb_002056_060 Hb_001338_040--Hb_002056_060 Hb_007747_200 Hb_007747_200 Hb_001338_040--Hb_007747_200 Hb_000836_080 Hb_000836_080 Hb_001338_040--Hb_000836_080 Hb_001338_040--Hb_000935_050 Hb_000019_130--Hb_027472_170 Hb_000019_130--Hb_007747_200 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000007_150 Hb_000007_150 Hb_000019_130--Hb_000007_150 Hb_000019_130--Hb_007075_050 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_000935_050--Hb_007075_050 Hb_000935_050--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_000935_050--Hb_000297_200 Hb_000935_050--Hb_007747_200 Hb_168319_030 Hb_168319_030 Hb_000019_060--Hb_168319_030 Hb_000019_060--Hb_007075_050 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_027472_170--Hb_000007_150 Hb_027472_170--Hb_168319_030 Hb_005686_030 Hb_005686_030 Hb_027472_170--Hb_005686_030 Hb_007075_050--Hb_119600_040 Hb_000236_140 Hb_000236_140 Hb_007075_050--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007075_050--Hb_003687_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89439 4.38633 0.517295 0.951227 2.20297 3.03232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.81894 6.71262 10.4326 1.98528 1.11441

CAGE analysis