Hb_005701_030

Information

Type -
Description -
Location Contig5701: 22252-27716
Sequence    

Annotation

kegg
ID rcu:RCOM_1596480
description hypothetical protein
nr
ID XP_002510477.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q91WU4
description Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2
trembl
ID B9R834
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1596480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_033772_050 0.1685342666 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
3 Hb_001364_030 0.1697444038 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
4 Hb_000363_140 0.1955699399 - - hypothetical protein CICLE_v10009052mg [Citrus clementina]
5 Hb_004296_020 0.2151404948 - - unnamed protein product [Coffea canephora]
6 Hb_000692_020 0.2201691356 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
7 Hb_004129_150 0.2240080198 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
8 Hb_000122_040 0.2427015558 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
9 Hb_003592_070 0.2489064016 - - -
10 Hb_008864_070 0.253904176 - - PREDICTED: uncharacterized protein LOC105803851 [Gossypium raimondii]
11 Hb_003992_080 0.2577845805 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
12 Hb_000326_060 0.2578241553 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
13 Hb_009974_030 0.2605181389 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
14 Hb_000103_060 0.2644480829 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
15 Hb_000175_130 0.2662489929 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
16 Hb_016604_020 0.2696313262 - - -
17 Hb_007943_140 0.2702773164 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
18 Hb_000094_110 0.2703720498 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004567_020 0.2718492678 - - Small ubiquitin-related modifier 2 [Morus notabilis]
20 Hb_005568_080 0.2725794904 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005701_030 Hb_005701_030 Hb_033772_050 Hb_033772_050 Hb_005701_030--Hb_033772_050 Hb_001364_030 Hb_001364_030 Hb_005701_030--Hb_001364_030 Hb_000363_140 Hb_000363_140 Hb_005701_030--Hb_000363_140 Hb_004296_020 Hb_004296_020 Hb_005701_030--Hb_004296_020 Hb_000692_020 Hb_000692_020 Hb_005701_030--Hb_000692_020 Hb_004129_150 Hb_004129_150 Hb_005701_030--Hb_004129_150 Hb_033772_050--Hb_000363_140 Hb_009486_190 Hb_009486_190 Hb_033772_050--Hb_009486_190 Hb_003992_080 Hb_003992_080 Hb_033772_050--Hb_003992_080 Hb_005568_080 Hb_005568_080 Hb_033772_050--Hb_005568_080 Hb_000326_060 Hb_000326_060 Hb_033772_050--Hb_000326_060 Hb_033772_050--Hb_004129_150 Hb_001364_030--Hb_000363_140 Hb_001364_030--Hb_033772_050 Hb_000260_310 Hb_000260_310 Hb_001364_030--Hb_000260_310 Hb_016604_020 Hb_016604_020 Hb_001364_030--Hb_016604_020 Hb_001364_030--Hb_009486_190 Hb_002798_050 Hb_002798_050 Hb_000363_140--Hb_002798_050 Hb_000914_090 Hb_000914_090 Hb_000363_140--Hb_000914_090 Hb_002909_070 Hb_002909_070 Hb_000363_140--Hb_002909_070 Hb_174865_030 Hb_174865_030 Hb_000363_140--Hb_174865_030 Hb_004296_020--Hb_033772_050 Hb_004296_020--Hb_001364_030 Hb_004296_020--Hb_000363_140 Hb_004296_020--Hb_000692_020 Hb_004296_020--Hb_004129_150 Hb_002603_060 Hb_002603_060 Hb_000692_020--Hb_002603_060 Hb_004567_020 Hb_004567_020 Hb_000692_020--Hb_004567_020 Hb_001017_070 Hb_001017_070 Hb_000692_020--Hb_001017_070 Hb_000483_480 Hb_000483_480 Hb_000692_020--Hb_000483_480 Hb_000816_230 Hb_000816_230 Hb_000692_020--Hb_000816_230 Hb_007943_140 Hb_007943_140 Hb_000692_020--Hb_007943_140 Hb_000175_130 Hb_000175_130 Hb_004129_150--Hb_000175_130 Hb_000094_110 Hb_000094_110 Hb_004129_150--Hb_000094_110 Hb_006738_010 Hb_006738_010 Hb_004129_150--Hb_006738_010 Hb_000032_350 Hb_000032_350 Hb_004129_150--Hb_000032_350 Hb_004129_150--Hb_007943_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193445 0.590839 0.0385948 0.0155103 0.0504451 0.0467482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.549566 1.13508 0.307387 0.0358446 0.0380621

CAGE analysis