Hb_000094_110

Information

Type -
Description -
Location Contig94: 81791-83676
Sequence    

Annotation

kegg
ID rcu:RCOM_1594200
description hypothetical protein
nr
ID XP_002510381.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7T8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1594200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63088: 81978-83422
cDNA
(Sanger)
(ID:Location)		 013_C10.ab1: 82695-83369

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001052_030 0.10204753 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
3 Hb_003847_020 0.1322025453 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_000175_130 0.1345577841 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
5 Hb_146225_010 0.1392851479 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
6 Hb_001386_050 0.1421827877 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
7 Hb_002918_140 0.1497586561 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
8 Hb_004129_150 0.1513780181 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
9 Hb_002326_180 0.1541909636 - - Protein Z, putative [Ricinus communis]
10 Hb_002105_030 0.1546131584 - - -
11 Hb_003398_140 0.1548110768 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_000340_440 0.1554104263 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
13 Hb_002045_230 0.1556828178 - - Ammonium transporter 2 [Theobroma cacao]
14 Hb_008948_050 0.1574617309 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
15 Hb_002344_070 0.1576166824 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
16 Hb_003992_080 0.1588099246 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
17 Hb_000563_240 0.1596541724 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
18 Hb_001863_420 0.1604355069 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
19 Hb_000853_240 0.1604940386 - - -
20 Hb_000270_620 0.165524424 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000094_110 Hb_000094_110 Hb_001052_030 Hb_001052_030 Hb_000094_110--Hb_001052_030 Hb_003847_020 Hb_003847_020 Hb_000094_110--Hb_003847_020 Hb_000175_130 Hb_000175_130 Hb_000094_110--Hb_000175_130 Hb_146225_010 Hb_146225_010 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_002918_140 Hb_002918_140 Hb_000094_110--Hb_002918_140 Hb_001052_030--Hb_146225_010 Hb_002045_230 Hb_002045_230 Hb_001052_030--Hb_002045_230 Hb_005841_050 Hb_005841_050 Hb_001052_030--Hb_005841_050 Hb_001052_030--Hb_002918_140 Hb_000123_160 Hb_000123_160 Hb_001052_030--Hb_000123_160 Hb_026687_010 Hb_026687_010 Hb_003847_020--Hb_026687_010 Hb_003398_140 Hb_003398_140 Hb_003847_020--Hb_003398_140 Hb_003992_080 Hb_003992_080 Hb_003847_020--Hb_003992_080 Hb_003847_020--Hb_001052_030 Hb_000340_440 Hb_000340_440 Hb_003847_020--Hb_000340_440 Hb_000853_240 Hb_000853_240 Hb_000175_130--Hb_000853_240 Hb_000175_130--Hb_002045_230 Hb_002326_180 Hb_002326_180 Hb_000175_130--Hb_002326_180 Hb_000316_100 Hb_000316_100 Hb_000175_130--Hb_000316_100 Hb_000175_130--Hb_001052_030 Hb_000696_220 Hb_000696_220 Hb_000175_130--Hb_000696_220 Hb_146225_010--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_146225_010--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_146225_010--Hb_003326_020 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_001386_050--Hb_000853_240 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_034585_050 Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_001863_420 Hb_001863_420 Hb_002918_140--Hb_001863_420 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_017862_010 Hb_017862_010 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.1333 25.1615 8.92267 12.0075 16.2534 22.5965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.5017 300.885 104.156 40.1766 4.2188

CAGE analysis