Hb_004846_160

Information

Type -
Description -
Location Contig4846: 224215-228058
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0A8XWZ0
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44921: 224309-224697 , PASA_asmbl_44924: 226629-227381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_160 0.0 - - -
2 Hb_000226_080 0.1756515545 - - prephenate dehydrogenase, putative [Ricinus communis]
3 Hb_005408_050 0.1885803024 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
4 Hb_000239_020 0.2048824398 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
5 Hb_052689_010 0.2065472393 - - heat shock cognate protein [Solanum commersonii]
6 Hb_024404_020 0.2069747185 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
7 Hb_004374_120 0.2136953366 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
8 Hb_007262_030 0.2175028513 - - -
9 Hb_001619_040 0.2180075625 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
10 Hb_000152_320 0.2180822587 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006268_020 0.2184186456 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
12 Hb_007044_050 0.2190954137 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
13 Hb_010344_050 0.2231321621 - - Adagio 1 -like protein [Gossypium arboreum]
14 Hb_004993_060 0.2232772804 - - -
15 Hb_025708_020 0.2237252004 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_008760_010 0.2244465622 - - berberine bridge enzyme [Hevea brasiliensis]
17 Hb_024468_010 0.2256456101 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
18 Hb_005285_020 0.2273728484 - - -
19 Hb_000076_140 0.2278422908 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_026048_020 0.2294313688 - - PREDICTED: uncharacterized protein LOC105645738 [Jatropha curcas]

Gene co-expression network

sample Hb_004846_160 Hb_004846_160 Hb_000226_080 Hb_000226_080 Hb_004846_160--Hb_000226_080 Hb_005408_050 Hb_005408_050 Hb_004846_160--Hb_005408_050 Hb_000239_020 Hb_000239_020 Hb_004846_160--Hb_000239_020 Hb_052689_010 Hb_052689_010 Hb_004846_160--Hb_052689_010 Hb_024404_020 Hb_024404_020 Hb_004846_160--Hb_024404_020 Hb_004374_120 Hb_004374_120 Hb_004846_160--Hb_004374_120 Hb_004993_060 Hb_004993_060 Hb_000226_080--Hb_004993_060 Hb_000226_080--Hb_024404_020 Hb_000270_120 Hb_000270_120 Hb_000226_080--Hb_000270_120 Hb_000549_040 Hb_000549_040 Hb_000226_080--Hb_000549_040 Hb_001619_040 Hb_001619_040 Hb_000226_080--Hb_001619_040 Hb_000226_080--Hb_000239_020 Hb_001387_030 Hb_001387_030 Hb_005408_050--Hb_001387_030 Hb_055101_010 Hb_055101_010 Hb_005408_050--Hb_055101_010 Hb_000077_060 Hb_000077_060 Hb_005408_050--Hb_000077_060 Hb_005408_050--Hb_000226_080 Hb_075807_010 Hb_075807_010 Hb_005408_050--Hb_075807_010 Hb_027393_030 Hb_027393_030 Hb_000239_020--Hb_027393_030 Hb_000367_260 Hb_000367_260 Hb_000239_020--Hb_000367_260 Hb_000239_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_000239_020--Hb_001504_330 Hb_000239_020--Hb_004993_060 Hb_005542_060 Hb_005542_060 Hb_000239_020--Hb_005542_060 Hb_001916_070 Hb_001916_070 Hb_052689_010--Hb_001916_070 Hb_003688_160 Hb_003688_160 Hb_052689_010--Hb_003688_160 Hb_000251_090 Hb_000251_090 Hb_052689_010--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_052689_010--Hb_089206_010 Hb_003032_020 Hb_003032_020 Hb_052689_010--Hb_003032_020 Hb_007820_010 Hb_007820_010 Hb_052689_010--Hb_007820_010 Hb_003037_020 Hb_003037_020 Hb_024404_020--Hb_003037_020 Hb_000152_320 Hb_000152_320 Hb_024404_020--Hb_000152_320 Hb_024404_020--Hb_000549_040 Hb_010368_060 Hb_010368_060 Hb_024404_020--Hb_010368_060 Hb_027472_070 Hb_027472_070 Hb_024404_020--Hb_027472_070 Hb_007904_130 Hb_007904_130 Hb_024404_020--Hb_007904_130 Hb_005550_010 Hb_005550_010 Hb_004374_120--Hb_005550_010 Hb_001170_030 Hb_001170_030 Hb_004374_120--Hb_001170_030 Hb_011512_130 Hb_011512_130 Hb_004374_120--Hb_011512_130 Hb_004374_120--Hb_007904_130 Hb_000076_140 Hb_000076_140 Hb_004374_120--Hb_000076_140 Hb_003090_100 Hb_003090_100 Hb_004374_120--Hb_003090_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.604788 2.06373 0.568318 2.15011 0.472615 0.17908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.568526 0.575197 5.39355 2.06475 1.93233

CAGE analysis