Hb_001619_040

Information

Type -
Description -
Location Contig1619: 49923-55799
Sequence    

Annotation

kegg
ID rcu:RCOM_1034980
description hypothetical protein
nr
ID XP_012067857.1
description PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
swissprot
ID Q9C9R6
description Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 SV=2
trembl
ID A0A067LA38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15777 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14525: 50434-53534 , PASA_asmbl_14526: 54596-54822 , PASA_asmbl_14527: 56211-56336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_040 0.0 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
2 Hb_000152_330 0.1301612287 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
3 Hb_000226_080 0.1379644024 - - prephenate dehydrogenase, putative [Ricinus communis]
4 Hb_024468_010 0.1438760789 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
5 Hb_001117_130 0.1454189045 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
6 Hb_005356_040 0.1475714056 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_000649_150 0.1509583738 - - PREDICTED: uncharacterized protein LOC105634115 [Jatropha curcas]
8 Hb_001411_140 0.152542396 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
9 Hb_004993_060 0.1537529707 - - -
10 Hb_000152_320 0.1547746016 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000270_120 0.1566664304 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
12 Hb_000173_470 0.158387106 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
13 Hb_012573_040 0.1596328022 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
14 Hb_034688_020 0.1615274936 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
15 Hb_000753_230 0.161735086 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
16 Hb_000061_230 0.1646665397 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
17 Hb_000021_050 0.1653255567 - - PREDICTED: uncharacterized protein LOC105645238 [Jatropha curcas]
18 Hb_168319_010 0.1655638826 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
19 Hb_000465_300 0.1658805711 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
20 Hb_000656_390 0.1660395984 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001619_040 Hb_001619_040 Hb_000152_330 Hb_000152_330 Hb_001619_040--Hb_000152_330 Hb_000226_080 Hb_000226_080 Hb_001619_040--Hb_000226_080 Hb_024468_010 Hb_024468_010 Hb_001619_040--Hb_024468_010 Hb_001117_130 Hb_001117_130 Hb_001619_040--Hb_001117_130 Hb_005356_040 Hb_005356_040 Hb_001619_040--Hb_005356_040 Hb_000649_150 Hb_000649_150 Hb_001619_040--Hb_000649_150 Hb_000270_120 Hb_000270_120 Hb_000152_330--Hb_000270_120 Hb_000656_390 Hb_000656_390 Hb_000152_330--Hb_000656_390 Hb_000951_130 Hb_000951_130 Hb_000152_330--Hb_000951_130 Hb_001411_140 Hb_001411_140 Hb_000152_330--Hb_001411_140 Hb_000173_470 Hb_000173_470 Hb_000152_330--Hb_000173_470 Hb_001723_100 Hb_001723_100 Hb_000152_330--Hb_001723_100 Hb_004993_060 Hb_004993_060 Hb_000226_080--Hb_004993_060 Hb_024404_020 Hb_024404_020 Hb_000226_080--Hb_024404_020 Hb_000226_080--Hb_000270_120 Hb_000549_040 Hb_000549_040 Hb_000226_080--Hb_000549_040 Hb_000239_020 Hb_000239_020 Hb_000226_080--Hb_000239_020 Hb_000086_630 Hb_000086_630 Hb_024468_010--Hb_000086_630 Hb_007044_050 Hb_007044_050 Hb_024468_010--Hb_007044_050 Hb_001604_150 Hb_001604_150 Hb_024468_010--Hb_001604_150 Hb_001105_110 Hb_001105_110 Hb_024468_010--Hb_001105_110 Hb_000001_130 Hb_000001_130 Hb_024468_010--Hb_000001_130 Hb_001159_190 Hb_001159_190 Hb_001117_130--Hb_001159_190 Hb_000753_230 Hb_000753_230 Hb_001117_130--Hb_000753_230 Hb_001117_130--Hb_000656_390 Hb_000656_310 Hb_000656_310 Hb_001117_130--Hb_000656_310 Hb_066920_030 Hb_066920_030 Hb_001117_130--Hb_066920_030 Hb_000465_270 Hb_000465_270 Hb_005356_040--Hb_000465_270 Hb_000928_110 Hb_000928_110 Hb_005356_040--Hb_000928_110 Hb_000007_140 Hb_000007_140 Hb_005356_040--Hb_000007_140 Hb_000110_140 Hb_000110_140 Hb_005356_040--Hb_000110_140 Hb_004800_100 Hb_004800_100 Hb_005356_040--Hb_004800_100 Hb_001504_330 Hb_001504_330 Hb_005356_040--Hb_001504_330 Hb_000649_150--Hb_001117_130 Hb_001944_020 Hb_001944_020 Hb_000649_150--Hb_001944_020 Hb_001794_060 Hb_001794_060 Hb_000649_150--Hb_001794_060 Hb_000649_150--Hb_001411_140 Hb_000649_150--Hb_000753_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.260602 2.8793 0.601334 2.02976 0.37887 0.325526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24015 1.66162 2.91914 1.29304 1.37502

CAGE analysis