Hb_001159_190

Information

Type -
Description -
Location Contig1159: 172324-175688
Sequence    

Annotation

kegg
ID rcu:RCOM_1681230
description amino acid binding protein, putative
nr
ID XP_002509632.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID Q9LNA5
description ACT domain-containing protein ACR8 OS=Arabidopsis thaliana GN=ACR8 PE=2 SV=1
trembl
ID B9RBU8
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_1681230 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing protein acr8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04785: 172423-175584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_190 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_001404_110 0.1075796425 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
3 Hb_000948_150 0.1163382319 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
4 Hb_001405_070 0.1201710199 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
5 Hb_032717_060 0.1251609719 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
6 Hb_000417_200 0.1287012416 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
7 Hb_066920_030 0.132948201 - - PREDICTED: adagio protein 1 [Jatropha curcas]
8 Hb_001723_100 0.1347381055 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
9 Hb_000170_130 0.1357853752 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
10 Hb_062226_070 0.1359432584 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
11 Hb_012506_040 0.136178748 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
12 Hb_012725_060 0.1394498308 - - protein binding protein, putative [Ricinus communis]
13 Hb_000181_340 0.1403172778 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_003032_020 0.1408746396 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
15 Hb_001117_130 0.1425072737 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
16 Hb_001541_070 0.1432240102 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
17 Hb_011671_410 0.1432556456 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
18 Hb_032202_040 0.1449823743 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
19 Hb_003607_130 0.1475959188 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_000008_440 0.1488666908 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]

Gene co-expression network

sample Hb_001159_190 Hb_001159_190 Hb_001404_110 Hb_001404_110 Hb_001159_190--Hb_001404_110 Hb_000948_150 Hb_000948_150 Hb_001159_190--Hb_000948_150 Hb_001405_070 Hb_001405_070 Hb_001159_190--Hb_001405_070 Hb_032717_060 Hb_032717_060 Hb_001159_190--Hb_032717_060 Hb_000417_200 Hb_000417_200 Hb_001159_190--Hb_000417_200 Hb_066920_030 Hb_066920_030 Hb_001159_190--Hb_066920_030 Hb_001404_110--Hb_066920_030 Hb_001723_100 Hb_001723_100 Hb_001404_110--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_001404_110--Hb_002830_010 Hb_000008_440 Hb_000008_440 Hb_001404_110--Hb_000008_440 Hb_002272_030 Hb_002272_030 Hb_001404_110--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_001404_110--Hb_020178_040 Hb_000152_110 Hb_000152_110 Hb_000948_150--Hb_000152_110 Hb_000181_340 Hb_000181_340 Hb_000948_150--Hb_000181_340 Hb_000094_070 Hb_000094_070 Hb_000948_150--Hb_000094_070 Hb_001912_110 Hb_001912_110 Hb_000948_150--Hb_001912_110 Hb_004108_160 Hb_004108_160 Hb_000948_150--Hb_004108_160 Hb_032202_040 Hb_032202_040 Hb_000948_150--Hb_032202_040 Hb_001405_070--Hb_000417_200 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_012725_060 Hb_012725_060 Hb_001405_070--Hb_012725_060 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_002542_110 Hb_002542_110 Hb_001405_070--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_001405_070--Hb_000170_130 Hb_006740_030 Hb_006740_030 Hb_032717_060--Hb_006740_030 Hb_000482_040 Hb_000482_040 Hb_032717_060--Hb_000482_040 Hb_032717_060--Hb_002542_110 Hb_032717_060--Hb_001405_070 Hb_001226_140 Hb_001226_140 Hb_032717_060--Hb_001226_140 Hb_009778_060 Hb_009778_060 Hb_032717_060--Hb_009778_060 Hb_000417_200--Hb_012725_060 Hb_002235_040 Hb_002235_040 Hb_000417_200--Hb_002235_040 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_066920_030--Hb_001723_100 Hb_005977_070 Hb_005977_070 Hb_066920_030--Hb_005977_070 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_066920_030--Hb_002830_010 Hb_000347_400 Hb_000347_400 Hb_066920_030--Hb_000347_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.31725 30.3869 13.1863 20.7724 16.3762 10.6764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.31662 15.257 37.118 10.0482 32.6105

CAGE analysis