Hb_000152_110

Information

Type -
Description -
Location Contig152: 70096-78867
Sequence    

Annotation

kegg
ID tcc:TCM_020446
description Cytochrome c oxidase 10
nr
ID XP_012068424.1
description PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID O64886
description Protoheme IX farnesyltransferase, mitochondrial OS=Arabidopsis thaliana GN=COX10 PE=2 SV=4
trembl
ID A0A067LAI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03610 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protoheme ix mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12951: 70027-78134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_110 0.0 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000003_710 0.0797687993 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
3 Hb_000094_070 0.0892964079 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
4 Hb_000948_150 0.0910427417 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
5 Hb_000482_040 0.1055179797 - - Protein YME1, putative [Ricinus communis]
6 Hb_002769_030 0.1059762684 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
7 Hb_027472_070 0.1102511201 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
8 Hb_003032_020 0.1132170284 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
9 Hb_008959_010 0.1150882436 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004583_010 0.1158287467 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
11 Hb_004712_130 0.1161385138 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
12 Hb_001163_060 0.1183452447 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_004108_160 0.118938337 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
14 Hb_000352_190 0.1191973312 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
15 Hb_000365_240 0.119232841 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
16 Hb_002055_040 0.1194159373 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
17 Hb_070256_010 0.119561792 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
18 Hb_000039_150 0.1225744374 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
19 Hb_009455_020 0.1225789541 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
20 Hb_001242_130 0.1237785921 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000152_110 Hb_000152_110 Hb_000003_710 Hb_000003_710 Hb_000152_110--Hb_000003_710 Hb_000094_070 Hb_000094_070 Hb_000152_110--Hb_000094_070 Hb_000948_150 Hb_000948_150 Hb_000152_110--Hb_000948_150 Hb_000482_040 Hb_000482_040 Hb_000152_110--Hb_000482_040 Hb_002769_030 Hb_002769_030 Hb_000152_110--Hb_002769_030 Hb_027472_070 Hb_027472_070 Hb_000152_110--Hb_027472_070 Hb_000003_710--Hb_002769_030 Hb_002241_010 Hb_002241_010 Hb_000003_710--Hb_002241_010 Hb_000003_710--Hb_000094_070 Hb_000003_710--Hb_000948_150 Hb_002006_030 Hb_002006_030 Hb_000003_710--Hb_002006_030 Hb_004712_130 Hb_004712_130 Hb_000094_070--Hb_004712_130 Hb_003125_170 Hb_003125_170 Hb_000094_070--Hb_003125_170 Hb_000181_340 Hb_000181_340 Hb_000094_070--Hb_000181_340 Hb_001157_240 Hb_001157_240 Hb_000094_070--Hb_001157_240 Hb_000039_150 Hb_000039_150 Hb_000094_070--Hb_000039_150 Hb_000366_040 Hb_000366_040 Hb_000094_070--Hb_000366_040 Hb_000948_150--Hb_000181_340 Hb_000948_150--Hb_000094_070 Hb_001912_110 Hb_001912_110 Hb_000948_150--Hb_001912_110 Hb_004108_160 Hb_004108_160 Hb_000948_150--Hb_004108_160 Hb_032202_040 Hb_032202_040 Hb_000948_150--Hb_032202_040 Hb_009778_060 Hb_009778_060 Hb_000482_040--Hb_009778_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_002769_030--Hb_000039_150 Hb_008959_010 Hb_008959_010 Hb_002769_030--Hb_008959_010 Hb_003153_010 Hb_003153_010 Hb_002769_030--Hb_003153_010 Hb_002769_030--Hb_001163_060 Hb_001629_030 Hb_001629_030 Hb_002769_030--Hb_001629_030 Hb_002769_030--Hb_004108_160 Hb_012725_060 Hb_012725_060 Hb_027472_070--Hb_012725_060 Hb_006816_280 Hb_006816_280 Hb_027472_070--Hb_006816_280 Hb_027472_070--Hb_004712_130 Hb_001242_130 Hb_001242_130 Hb_027472_070--Hb_001242_130 Hb_001999_090 Hb_001999_090 Hb_027472_070--Hb_001999_090 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00588 3.07938 4.04055 1.93639 2.95403 2.44564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22026 3.19197 7.13155 3.50723 6.74839

CAGE analysis