Hb_000948_150

Information

Type -
Description -
Location Contig948: 152878-155403
Sequence    

Annotation

kegg
ID rcu:RCOM_0517280
description protein with unknown function
nr
ID XP_012072964.1
description PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
swissprot
ID Q9SR77
description Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=2 SV=1
trembl
ID A0A067KQQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06752 PE=4 SV=1
Gene Ontology
ID GO:0009535
description heme-binding-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63319: 153290-155224 , PASA_asmbl_63320: 154229-154384 , PASA_asmbl_63321: 155967-157433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_150 0.0 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
2 Hb_000152_110 0.0910427417 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000181_340 0.0924244858 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
4 Hb_000094_070 0.0948095574 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
5 Hb_001912_110 0.0975258226 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_004108_160 0.100487735 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
7 Hb_032202_040 0.1007312031 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
8 Hb_000003_710 0.10149467 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
9 Hb_001404_110 0.1015958836 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
10 Hb_001999_290 0.1039379554 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
11 Hb_000008_440 0.1107196121 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
12 Hb_000925_130 0.1109976302 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
13 Hb_000352_190 0.1120650501 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
14 Hb_008959_010 0.1121053659 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003032_020 0.1123328865 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
16 Hb_062226_070 0.1126618299 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
17 Hb_003125_170 0.1136060623 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
18 Hb_027472_070 0.1147330092 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
19 Hb_000096_140 0.1149899006 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000482_040 0.1156038616 - - Protein YME1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000948_150 Hb_000948_150 Hb_000152_110 Hb_000152_110 Hb_000948_150--Hb_000152_110 Hb_000181_340 Hb_000181_340 Hb_000948_150--Hb_000181_340 Hb_000094_070 Hb_000094_070 Hb_000948_150--Hb_000094_070 Hb_001912_110 Hb_001912_110 Hb_000948_150--Hb_001912_110 Hb_004108_160 Hb_004108_160 Hb_000948_150--Hb_004108_160 Hb_032202_040 Hb_032202_040 Hb_000948_150--Hb_032202_040 Hb_000003_710 Hb_000003_710 Hb_000152_110--Hb_000003_710 Hb_000152_110--Hb_000094_070 Hb_000482_040 Hb_000482_040 Hb_000152_110--Hb_000482_040 Hb_002769_030 Hb_002769_030 Hb_000152_110--Hb_002769_030 Hb_027472_070 Hb_027472_070 Hb_000152_110--Hb_027472_070 Hb_000193_330 Hb_000193_330 Hb_000181_340--Hb_000193_330 Hb_012632_010 Hb_012632_010 Hb_000181_340--Hb_012632_010 Hb_062226_070 Hb_062226_070 Hb_000181_340--Hb_062226_070 Hb_004374_110 Hb_004374_110 Hb_000181_340--Hb_004374_110 Hb_000103_340 Hb_000103_340 Hb_000181_340--Hb_000103_340 Hb_001999_290 Hb_001999_290 Hb_000181_340--Hb_001999_290 Hb_004712_130 Hb_004712_130 Hb_000094_070--Hb_004712_130 Hb_003125_170 Hb_003125_170 Hb_000094_070--Hb_003125_170 Hb_000094_070--Hb_000181_340 Hb_001157_240 Hb_001157_240 Hb_000094_070--Hb_001157_240 Hb_000039_150 Hb_000039_150 Hb_000094_070--Hb_000039_150 Hb_000366_040 Hb_000366_040 Hb_000094_070--Hb_000366_040 Hb_000096_140 Hb_000096_140 Hb_001912_110--Hb_000096_140 Hb_000260_010 Hb_000260_010 Hb_001912_110--Hb_000260_010 Hb_027380_220 Hb_027380_220 Hb_001912_110--Hb_027380_220 Hb_000260_350 Hb_000260_350 Hb_001912_110--Hb_000260_350 Hb_000349_260 Hb_000349_260 Hb_001912_110--Hb_000349_260 Hb_000925_130 Hb_000925_130 Hb_001912_110--Hb_000925_130 Hb_003153_010 Hb_003153_010 Hb_004108_160--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_004108_160--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004108_160--Hb_001629_030 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_001818_100 Hb_001818_100 Hb_004108_160--Hb_001818_100 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_000008_440 Hb_000008_440 Hb_032202_040--Hb_000008_440 Hb_001226_140 Hb_001226_140 Hb_032202_040--Hb_001226_140 Hb_032202_040--Hb_001818_100 Hb_007533_040 Hb_007533_040 Hb_032202_040--Hb_007533_040 Hb_032202_040--Hb_000482_040 Hb_000027_260 Hb_000027_260 Hb_032202_040--Hb_000027_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39048 5.90034 5.55117 4.97901 6.23563 3.20713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74296 4.75561 10.241 3.94224 8.82927

CAGE analysis