Hb_000096_140

Information

Type transcription factor
Description TF Family: GNAT
Location Contig96: 137618-146766
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14900g
description POPTRDRAFT_869897; hypothetical protein
nr
ID XP_012079425.1
description PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q84JF4
description Probable amino-acid acetyltransferase NAGS1, chloroplastic OS=Arabidopsis thaliana GN=NAGS1 PE=2 SV=1
trembl
ID A0A067K764
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12547 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable amino-acid acetyltransferase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63693: 136369-137278 , PASA_asmbl_63694: 137290-137892 , PASA_asmbl_63695: 139258-147010
cDNA
(Sanger)
(ID:Location)		 039_I16.ab1: 139260-140354

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_140 0.0 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001912_110 0.0647964257 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_004108_160 0.0774377239 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
4 Hb_000027_260 0.0790776504 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
5 Hb_001352_020 0.0796006479 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
6 Hb_010515_020 0.0849352767 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
7 Hb_002830_010 0.0856470072 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
8 Hb_001818_100 0.0859513617 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
9 Hb_000487_270 0.0866606089 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
10 Hb_008279_040 0.0875153946 - - Rer1 family protein isoform 2 [Theobroma cacao]
11 Hb_001629_030 0.0882025969 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
12 Hb_000349_260 0.0885684433 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
13 Hb_019181_040 0.0893544595 - - component of oligomeric golgi complex, putative [Ricinus communis]
14 Hb_001789_150 0.0901502998 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
15 Hb_000260_350 0.0906944209 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000003_590 0.0918850446 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
17 Hb_000116_260 0.0919340085 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
18 Hb_003025_100 0.0927000694 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
19 Hb_001304_110 0.0935418371 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
20 Hb_005054_110 0.0942785012 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000096_140 Hb_000096_140 Hb_001912_110 Hb_001912_110 Hb_000096_140--Hb_001912_110 Hb_004108_160 Hb_004108_160 Hb_000096_140--Hb_004108_160 Hb_000027_260 Hb_000027_260 Hb_000096_140--Hb_000027_260 Hb_001352_020 Hb_001352_020 Hb_000096_140--Hb_001352_020 Hb_010515_020 Hb_010515_020 Hb_000096_140--Hb_010515_020 Hb_002830_010 Hb_002830_010 Hb_000096_140--Hb_002830_010 Hb_000260_010 Hb_000260_010 Hb_001912_110--Hb_000260_010 Hb_027380_220 Hb_027380_220 Hb_001912_110--Hb_027380_220 Hb_000260_350 Hb_000260_350 Hb_001912_110--Hb_000260_350 Hb_000349_260 Hb_000349_260 Hb_001912_110--Hb_000349_260 Hb_000925_130 Hb_000925_130 Hb_001912_110--Hb_000925_130 Hb_003153_010 Hb_003153_010 Hb_004108_160--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_004108_160--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004108_160--Hb_001629_030 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_001818_100 Hb_001818_100 Hb_004108_160--Hb_001818_100 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_000454_090 Hb_000454_090 Hb_000027_260--Hb_000454_090 Hb_032202_040 Hb_032202_040 Hb_000027_260--Hb_032202_040 Hb_007533_040 Hb_007533_040 Hb_000027_260--Hb_007533_040 Hb_005601_040 Hb_005601_040 Hb_000027_260--Hb_005601_040 Hb_000027_260--Hb_004108_160 Hb_000116_260 Hb_000116_260 Hb_001352_020--Hb_000116_260 Hb_000497_300 Hb_000497_300 Hb_001352_020--Hb_000497_300 Hb_000406_130 Hb_000406_130 Hb_001352_020--Hb_000406_130 Hb_001789_150 Hb_001789_150 Hb_001352_020--Hb_001789_150 Hb_000471_110 Hb_000471_110 Hb_001352_020--Hb_000471_110 Hb_010344_050 Hb_010344_050 Hb_001352_020--Hb_010344_050 Hb_006452_120 Hb_006452_120 Hb_010515_020--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_010515_020--Hb_000574_450 Hb_002989_020 Hb_002989_020 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_029243_030 Hb_029243_030 Hb_010515_020--Hb_029243_030 Hb_010515_020--Hb_002830_010 Hb_005582_040 Hb_005582_040 Hb_002830_010--Hb_005582_040 Hb_004030_080 Hb_004030_080 Hb_002830_010--Hb_004030_080 Hb_002071_070 Hb_002071_070 Hb_002830_010--Hb_002071_070 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76318 3.86715 3.76779 6.26128 4.18665 3.40026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26225 4.77994 6.55689 4.39123 6.27936

CAGE analysis