Hb_001226_140

Information

Type -
Description -
Location Contig1226: 196626-201054
Sequence    

Annotation

kegg
ID rcu:RCOM_0706330
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012077234.1
description PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
swissprot
ID Q9CAJ0
description Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1
trembl
ID A0A067KCW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07637 PE=3 SV=1
Gene Ontology
ID GO:0004722
description abscisic acid insensitivity 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06863: 196753-201093 , PASA_asmbl_06864: 196753-201093 , PASA_asmbl_06865: 196819-201087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_140 0.0 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
2 Hb_032202_040 0.0705528285 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
3 Hb_022092_030 0.0721525295 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
4 Hb_008421_020 0.0736066124 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
5 Hb_000504_180 0.0824154315 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_001818_100 0.0826313208 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_158530_020 0.0836400187 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
8 Hb_000107_430 0.085336355 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
9 Hb_001766_050 0.0878458337 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
10 Hb_001195_450 0.0881055818 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
11 Hb_000482_040 0.0898323574 - - Protein YME1, putative [Ricinus communis]
12 Hb_000768_200 0.0924044301 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
13 Hb_171215_010 0.0936971613 - - vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_013405_020 0.0943216562 - - -
15 Hb_015675_040 0.0946980338 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
16 Hb_000805_100 0.0955410898 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_005016_040 0.0960728969 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
18 Hb_011606_020 0.0975013437 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
19 Hb_001314_080 0.0978202427 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
20 Hb_007533_040 0.0979643348 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_001226_140 Hb_001226_140 Hb_032202_040 Hb_032202_040 Hb_001226_140--Hb_032202_040 Hb_022092_030 Hb_022092_030 Hb_001226_140--Hb_022092_030 Hb_008421_020 Hb_008421_020 Hb_001226_140--Hb_008421_020 Hb_000504_180 Hb_000504_180 Hb_001226_140--Hb_000504_180 Hb_001818_100 Hb_001818_100 Hb_001226_140--Hb_001818_100 Hb_158530_020 Hb_158530_020 Hb_001226_140--Hb_158530_020 Hb_000008_440 Hb_000008_440 Hb_032202_040--Hb_000008_440 Hb_032202_040--Hb_001818_100 Hb_007533_040 Hb_007533_040 Hb_032202_040--Hb_007533_040 Hb_000482_040 Hb_000482_040 Hb_032202_040--Hb_000482_040 Hb_000027_260 Hb_000027_260 Hb_032202_040--Hb_000027_260 Hb_000340_040 Hb_000340_040 Hb_022092_030--Hb_000340_040 Hb_005511_140 Hb_005511_140 Hb_022092_030--Hb_005511_140 Hb_000169_020 Hb_000169_020 Hb_022092_030--Hb_000169_020 Hb_000567_230 Hb_000567_230 Hb_022092_030--Hb_000567_230 Hb_003125_220 Hb_003125_220 Hb_022092_030--Hb_003125_220 Hb_000811_070 Hb_000811_070 Hb_008421_020--Hb_000811_070 Hb_013405_020 Hb_013405_020 Hb_008421_020--Hb_013405_020 Hb_001541_120 Hb_001541_120 Hb_008421_020--Hb_001541_120 Hb_003153_010 Hb_003153_010 Hb_008421_020--Hb_003153_010 Hb_004108_160 Hb_004108_160 Hb_008421_020--Hb_004108_160 Hb_005016_040 Hb_005016_040 Hb_008421_020--Hb_005016_040 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_001629_030 Hb_001629_030 Hb_001818_100--Hb_001629_030 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_004052_170 Hb_004052_170 Hb_001818_100--Hb_004052_170 Hb_001818_100--Hb_004108_160 Hb_005601_040 Hb_005601_040 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_015675_040 Hb_015675_040 Hb_158530_020--Hb_015675_040 Hb_000185_220 Hb_000185_220 Hb_158530_020--Hb_000185_220 Hb_062226_060 Hb_062226_060 Hb_158530_020--Hb_062226_060 Hb_006059_010 Hb_006059_010 Hb_158530_020--Hb_006059_010 Hb_000023_360 Hb_000023_360 Hb_158530_020--Hb_000023_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4921 26.5709 32.2279 44.2168 12.9253 21.5463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2699 27.5389 37.3395 19.9819 58.8143

CAGE analysis