Hb_002241_010

Information

Type -
Description -
Location Contig2241: 2710-4715
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11740g
description POPTRDRAFT_1083288; hypothetical protein
nr
ID XP_012079155.1
description PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
swissprot
ID F4IE65
description Putative methylesterase 13, chloroplastic OS=Arabidopsis thaliana GN=MES13 PE=2 SV=1
trembl
ID B9HEE5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11740g PE=4 SV=2
Gene Ontology
ID GO:0016787
description polyneuridine-aldehyde esterase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23315: 2745-4084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002241_010 0.0 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
2 Hb_000003_710 0.0949938147 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
3 Hb_000190_030 0.0953214239 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
4 Hb_002929_060 0.1107779626 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001243_040 0.1121820932 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
6 Hb_114310_090 0.1133443385 - - PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
7 Hb_000753_240 0.1159011206 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
8 Hb_001322_110 0.1171188572 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000917_060 0.1207689614 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
10 Hb_000866_260 0.121569101 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
11 Hb_002333_060 0.1233195183 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_001287_040 0.1248191275 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
13 Hb_000152_110 0.1260679482 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000815_070 0.1277399928 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
15 Hb_002408_020 0.1277559471 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
16 Hb_012022_150 0.1280063419 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
17 Hb_018133_040 0.1291497521 - - PREDICTED: probable apyrase 7 [Jatropha curcas]
18 Hb_000300_180 0.1292511305 - - transcription initiation factor brf1, putative [Ricinus communis]
19 Hb_071188_010 0.1303844767 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
20 Hb_032264_070 0.1319464282 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002241_010 Hb_002241_010 Hb_000003_710 Hb_000003_710 Hb_002241_010--Hb_000003_710 Hb_000190_030 Hb_000190_030 Hb_002241_010--Hb_000190_030 Hb_002929_060 Hb_002929_060 Hb_002241_010--Hb_002929_060 Hb_001243_040 Hb_001243_040 Hb_002241_010--Hb_001243_040 Hb_114310_090 Hb_114310_090 Hb_002241_010--Hb_114310_090 Hb_000753_240 Hb_000753_240 Hb_002241_010--Hb_000753_240 Hb_000152_110 Hb_000152_110 Hb_000003_710--Hb_000152_110 Hb_002769_030 Hb_002769_030 Hb_000003_710--Hb_002769_030 Hb_000094_070 Hb_000094_070 Hb_000003_710--Hb_000094_070 Hb_000948_150 Hb_000948_150 Hb_000003_710--Hb_000948_150 Hb_002006_030 Hb_002006_030 Hb_000003_710--Hb_002006_030 Hb_000300_180 Hb_000300_180 Hb_000190_030--Hb_000300_180 Hb_003038_200 Hb_003038_200 Hb_000190_030--Hb_003038_200 Hb_003029_070 Hb_003029_070 Hb_000190_030--Hb_003029_070 Hb_071188_010 Hb_071188_010 Hb_000190_030--Hb_071188_010 Hb_000062_370 Hb_000062_370 Hb_000190_030--Hb_000062_370 Hb_000224_160 Hb_000224_160 Hb_000190_030--Hb_000224_160 Hb_012384_030 Hb_012384_030 Hb_002929_060--Hb_012384_030 Hb_000402_120 Hb_000402_120 Hb_002929_060--Hb_000402_120 Hb_001776_060 Hb_001776_060 Hb_002929_060--Hb_001776_060 Hb_170416_010 Hb_170416_010 Hb_002929_060--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_002929_060--Hb_001025_120 Hb_002716_060 Hb_002716_060 Hb_002929_060--Hb_002716_060 Hb_001243_040--Hb_114310_090 Hb_018133_040 Hb_018133_040 Hb_001243_040--Hb_018133_040 Hb_000731_270 Hb_000731_270 Hb_001243_040--Hb_000731_270 Hb_001632_040 Hb_001632_040 Hb_001243_040--Hb_001632_040 Hb_001696_010 Hb_001696_010 Hb_001243_040--Hb_001696_010 Hb_001322_170 Hb_001322_170 Hb_001243_040--Hb_001322_170 Hb_007416_330 Hb_007416_330 Hb_114310_090--Hb_007416_330 Hb_032202_140 Hb_032202_140 Hb_114310_090--Hb_032202_140 Hb_002013_020 Hb_002013_020 Hb_114310_090--Hb_002013_020 Hb_114310_090--Hb_001632_040 Hb_123915_040 Hb_123915_040 Hb_114310_090--Hb_123915_040 Hb_000753_240--Hb_003029_070 Hb_004970_190 Hb_004970_190 Hb_000753_240--Hb_004970_190 Hb_000866_010 Hb_000866_010 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_000753_240--Hb_002013_020 Hb_000804_040 Hb_000804_040 Hb_000753_240--Hb_000804_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59886 4.38019 9.54609 2.38542 7.56346 4.26769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.60693 7.08821 9.17226 4.21617 8.46198

CAGE analysis