Hb_032717_060

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig32717: 142224-151152
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43140g
description hypothetical protein
nr
ID XP_012075546.1
description PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
swissprot
ID Q8GUI6
description Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1
trembl
ID A0A067KFH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09170 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lysine-specific demethylase jmj18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34427: 141934-145308 , PASA_asmbl_34428: 142383-145308 , PASA_asmbl_34429: 145393-147887 , PASA_asmbl_34431: 148522-148751 , PASA_asmbl_34432: 148753-149911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032717_060 0.0 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
2 Hb_006740_030 0.0909407729 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
3 Hb_000482_040 0.0928038994 - - Protein YME1, putative [Ricinus communis]
4 Hb_002542_110 0.0961557912 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
5 Hb_001405_070 0.0973827875 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
6 Hb_001226_140 0.0983608095 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
7 Hb_009778_060 0.0987113898 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
8 Hb_008421_020 0.1003141146 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
9 Hb_001404_110 0.1007316158 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
10 Hb_000504_180 0.1045019165 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_032202_040 0.1066824963 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
12 Hb_000008_440 0.1081043516 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
13 Hb_000086_630 0.1082862341 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
14 Hb_158530_020 0.1087379531 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
15 Hb_000130_220 0.1087508974 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
16 Hb_004218_020 0.1087972809 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002686_090 0.1108778917 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
18 Hb_001541_120 0.1113480619 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
19 Hb_003913_130 0.1120612698 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
20 Hb_001716_040 0.1128743485 - - ribonuclease p/mrp subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_032717_060 Hb_032717_060 Hb_006740_030 Hb_006740_030 Hb_032717_060--Hb_006740_030 Hb_000482_040 Hb_000482_040 Hb_032717_060--Hb_000482_040 Hb_002542_110 Hb_002542_110 Hb_032717_060--Hb_002542_110 Hb_001405_070 Hb_001405_070 Hb_032717_060--Hb_001405_070 Hb_001226_140 Hb_001226_140 Hb_032717_060--Hb_001226_140 Hb_009778_060 Hb_009778_060 Hb_032717_060--Hb_009778_060 Hb_000140_090 Hb_000140_090 Hb_006740_030--Hb_000140_090 Hb_001541_120 Hb_001541_120 Hb_006740_030--Hb_001541_120 Hb_000928_070 Hb_000928_070 Hb_006740_030--Hb_000928_070 Hb_000811_070 Hb_000811_070 Hb_006740_030--Hb_000811_070 Hb_008421_020 Hb_008421_020 Hb_006740_030--Hb_008421_020 Hb_007533_040 Hb_007533_040 Hb_006740_030--Hb_007533_040 Hb_000482_040--Hb_009778_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_000640_040 Hb_000640_040 Hb_002542_110--Hb_000640_040 Hb_010068_080 Hb_010068_080 Hb_002542_110--Hb_010068_080 Hb_001716_040 Hb_001716_040 Hb_002542_110--Hb_001716_040 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_000417_200 Hb_000417_200 Hb_001405_070--Hb_000417_200 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_012725_060 Hb_012725_060 Hb_001405_070--Hb_012725_060 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_001405_070--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_001405_070--Hb_000170_130 Hb_032202_040 Hb_032202_040 Hb_001226_140--Hb_032202_040 Hb_022092_030 Hb_022092_030 Hb_001226_140--Hb_022092_030 Hb_001226_140--Hb_008421_020 Hb_000504_180 Hb_000504_180 Hb_001226_140--Hb_000504_180 Hb_001818_100 Hb_001818_100 Hb_001226_140--Hb_001818_100 Hb_158530_020 Hb_158530_020 Hb_001226_140--Hb_158530_020 Hb_001214_050 Hb_001214_050 Hb_009778_060--Hb_001214_050 Hb_001195_450 Hb_001195_450 Hb_009778_060--Hb_001195_450 Hb_001723_060 Hb_001723_060 Hb_009778_060--Hb_001723_060 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_009778_060--Hb_000635_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29497 5.07397 3.78919 4.44697 1.98273 2.63109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.36319 4.92992 5.86427 2.74357 7.61968

CAGE analysis