Hb_000656_310

Information

Type -
Description -
Location Contig656: 264418-267857
Sequence    

Annotation

kegg
ID rcu:RCOM_0083660
description cation:cation antiporter, putative
nr
ID XP_012068867.1
description PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
swissprot
ID Q9SYG9
description Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1
trembl
ID A0A067L870
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24684 PE=4 SV=1
Gene Ontology
ID GO:0005834
description cation calcium exchanger 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52741: 265525-266310 , PASA_asmbl_52742: 266883-267656
cDNA
(Sanger)
(ID:Location)		 045_D17.ab1: 265602-266310

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_310 0.0 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
2 Hb_001226_140 0.1018781265 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
3 Hb_000465_280 0.1041360048 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
4 Hb_000504_180 0.1059459123 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
5 Hb_022092_030 0.1112661151 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
6 Hb_001080_300 0.1124207833 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
7 Hb_138585_080 0.1160431442 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
8 Hb_011606_020 0.1166343432 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
9 Hb_009296_080 0.1178632081 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
10 Hb_005511_150 0.1193211591 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
11 Hb_001723_060 0.1225009368 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
12 Hb_009178_060 0.1227785039 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002611_010 0.1230297836 - - amino acid transporter, putative [Ricinus communis]
14 Hb_032717_060 0.1234530918 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
15 Hb_012506_040 0.1238455706 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
16 Hb_001627_040 0.1239467383 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
17 Hb_001029_040 0.124895158 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
18 Hb_000061_230 0.1250211424 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
19 Hb_032202_040 0.1260563268 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
20 Hb_000309_050 0.1262030107 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_310 Hb_000656_310 Hb_001226_140 Hb_001226_140 Hb_000656_310--Hb_001226_140 Hb_000465_280 Hb_000465_280 Hb_000656_310--Hb_000465_280 Hb_000504_180 Hb_000504_180 Hb_000656_310--Hb_000504_180 Hb_022092_030 Hb_022092_030 Hb_000656_310--Hb_022092_030 Hb_001080_300 Hb_001080_300 Hb_000656_310--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_000656_310--Hb_138585_080 Hb_032202_040 Hb_032202_040 Hb_001226_140--Hb_032202_040 Hb_001226_140--Hb_022092_030 Hb_008421_020 Hb_008421_020 Hb_001226_140--Hb_008421_020 Hb_001226_140--Hb_000504_180 Hb_001818_100 Hb_001818_100 Hb_001226_140--Hb_001818_100 Hb_158530_020 Hb_158530_020 Hb_001226_140--Hb_158530_020 Hb_012506_040 Hb_012506_040 Hb_000465_280--Hb_012506_040 Hb_006775_130 Hb_006775_130 Hb_000465_280--Hb_006775_130 Hb_007763_070 Hb_007763_070 Hb_000465_280--Hb_007763_070 Hb_000465_280--Hb_000504_180 Hb_009296_080 Hb_009296_080 Hb_000465_280--Hb_009296_080 Hb_002686_090 Hb_002686_090 Hb_000465_280--Hb_002686_090 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_000340_040 Hb_000340_040 Hb_022092_030--Hb_000340_040 Hb_005511_140 Hb_005511_140 Hb_022092_030--Hb_005511_140 Hb_000169_020 Hb_000169_020 Hb_022092_030--Hb_000169_020 Hb_000567_230 Hb_000567_230 Hb_022092_030--Hb_000567_230 Hb_003125_220 Hb_003125_220 Hb_022092_030--Hb_003125_220 Hb_004957_030 Hb_004957_030 Hb_001080_300--Hb_004957_030 Hb_000185_220 Hb_000185_220 Hb_001080_300--Hb_000185_220 Hb_001627_040 Hb_001627_040 Hb_001080_300--Hb_001627_040 Hb_000417_390 Hb_000417_390 Hb_001080_300--Hb_000417_390 Hb_001029_040 Hb_001029_040 Hb_001080_300--Hb_001029_040 Hb_001080_300--Hb_001975_150 Hb_138585_080--Hb_009296_080 Hb_138585_080--Hb_001029_040 Hb_138585_080--Hb_000504_180 Hb_001946_180 Hb_001946_180 Hb_138585_080--Hb_001946_180 Hb_002874_110 Hb_002874_110 Hb_138585_080--Hb_002874_110 Hb_138585_080--Hb_000465_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62096 9.53508 5.26851 14.1713 2.60017 4.27434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.35007 6.1142 10.7724 5.36507 19.5947

CAGE analysis