Hb_000001_130

Information

Type -
Description -
Location Contig1: 213361-217658
Sequence    

Annotation

kegg
ID tcc:TCM_035772
description DNA/RNA polymerases superfamily protein
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQP6
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_035774 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_130 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_005227_040 0.1164175017 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
3 Hb_000215_360 0.1244157081 - - Uncharacterized protein isoform 2 [Theobroma cacao]
4 Hb_012760_110 0.1309892814 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
5 Hb_000086_630 0.1446391639 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
6 Hb_001242_130 0.1467635886 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
7 Hb_001604_150 0.1498178275 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
8 Hb_024468_010 0.151902197 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
9 Hb_000922_250 0.1543541953 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_012725_060 0.156521556 - - protein binding protein, putative [Ricinus communis]
11 Hb_094970_010 0.1590309132 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
12 Hb_002338_050 0.1597553425 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
13 Hb_000920_130 0.1608285932 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001691_200 0.1619716107 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
15 Hb_002686_090 0.1635667225 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
16 Hb_000204_070 0.1647915742 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
17 Hb_000122_210 0.1666674773 - - -
18 Hb_001478_010 0.1672281472 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
19 Hb_002131_030 0.1713958401 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
20 Hb_003494_230 0.1714820505 - - starch synthase isoform II [Manihot esculenta]

Gene co-expression network

sample Hb_000001_130 Hb_000001_130 Hb_005227_040 Hb_005227_040 Hb_000001_130--Hb_005227_040 Hb_000215_360 Hb_000215_360 Hb_000001_130--Hb_000215_360 Hb_012760_110 Hb_012760_110 Hb_000001_130--Hb_012760_110 Hb_000086_630 Hb_000086_630 Hb_000001_130--Hb_000086_630 Hb_001242_130 Hb_001242_130 Hb_000001_130--Hb_001242_130 Hb_001604_150 Hb_001604_150 Hb_000001_130--Hb_001604_150 Hb_005227_040--Hb_001604_150 Hb_011609_090 Hb_011609_090 Hb_005227_040--Hb_011609_090 Hb_002235_100 Hb_002235_100 Hb_005227_040--Hb_002235_100 Hb_000920_130 Hb_000920_130 Hb_005227_040--Hb_000920_130 Hb_000035_350 Hb_000035_350 Hb_005227_040--Hb_000035_350 Hb_042474_010 Hb_042474_010 Hb_000215_360--Hb_042474_010 Hb_000190_090 Hb_000190_090 Hb_000215_360--Hb_000190_090 Hb_016347_010 Hb_016347_010 Hb_000215_360--Hb_016347_010 Hb_001728_140 Hb_001728_140 Hb_000215_360--Hb_001728_140 Hb_073171_100 Hb_073171_100 Hb_000215_360--Hb_073171_100 Hb_001691_200 Hb_001691_200 Hb_000215_360--Hb_001691_200 Hb_012760_110--Hb_000215_360 Hb_003185_100 Hb_003185_100 Hb_012760_110--Hb_003185_100 Hb_000204_070 Hb_000204_070 Hb_012760_110--Hb_000204_070 Hb_012760_110--Hb_073171_100 Hb_012760_110--Hb_001691_200 Hb_000270_120 Hb_000270_120 Hb_000086_630--Hb_000270_120 Hb_001105_110 Hb_001105_110 Hb_000086_630--Hb_001105_110 Hb_001635_190 Hb_001635_190 Hb_000086_630--Hb_001635_190 Hb_158530_020 Hb_158530_020 Hb_000086_630--Hb_158530_020 Hb_001716_040 Hb_001716_040 Hb_000086_630--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000086_630--Hb_002542_110 Hb_012725_060 Hb_012725_060 Hb_001242_130--Hb_012725_060 Hb_027472_070 Hb_027472_070 Hb_001242_130--Hb_027472_070 Hb_004712_130 Hb_004712_130 Hb_001242_130--Hb_004712_130 Hb_000479_140 Hb_000479_140 Hb_001242_130--Hb_000479_140 Hb_000497_300 Hb_000497_300 Hb_001242_130--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001242_130--Hb_001352_020 Hb_002307_310 Hb_002307_310 Hb_001604_150--Hb_002307_310 Hb_031910_020 Hb_031910_020 Hb_001604_150--Hb_031910_020 Hb_002631_180 Hb_002631_180 Hb_001604_150--Hb_002631_180 Hb_001604_150--Hb_000215_360 Hb_000009_050 Hb_000009_050 Hb_001604_150--Hb_000009_050 Hb_004429_020 Hb_004429_020 Hb_001604_150--Hb_004429_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0474659 0.235823 0.137993 0.082302 0.0335714 0.0991547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118058 0.18579 0.265063 0.375324 0.393983

CAGE analysis