Hb_012760_110

Information

Type -
Description -
Location Contig12760: 73646-79004
Sequence    

Annotation

kegg
ID rcu:RCOM_0361200
description hypothetical protein
nr
ID XP_012088472.1
description PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
swissprot
ID A2AA28
description Methyltransferase-like protein 23 OS=Mus musculus GN=Mettl23 PE=2 SV=1
trembl
ID A0A067JJA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25355 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase-like protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08431: 76488-77272
cDNA
(Sanger)
(ID:Location)		 008_M19r.ab1: 74517-75748

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_110 0.0 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
2 Hb_000215_360 0.123981161 - - Uncharacterized protein isoform 2 [Theobroma cacao]
3 Hb_000001_130 0.1309892814 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
4 Hb_003185_100 0.1395319775 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
5 Hb_000204_070 0.1474555276 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
6 Hb_073171_100 0.1593322036 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
7 Hb_001691_200 0.1602993783 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
8 Hb_001223_010 0.1610298491 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
9 Hb_000227_330 0.1635005334 - - Acyl-CoA synthetase [Ricinus communis]
10 Hb_000808_170 0.1644624194 - - protein disulfide isomerase, putative [Ricinus communis]
11 Hb_000125_180 0.1677268908 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
12 Hb_000922_250 0.1679311464 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002908_040 0.1690889952 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
14 Hb_027760_090 0.1691391378 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_007472_080 0.1736599431 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
16 Hb_001006_010 0.1741424923 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_000331_510 0.1761280184 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
18 Hb_000205_250 0.1762404201 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
19 Hb_004306_120 0.1770872485 - - DNA binding protein, putative [Ricinus communis]
20 Hb_005015_110 0.1781411334 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012760_110 Hb_012760_110 Hb_000215_360 Hb_000215_360 Hb_012760_110--Hb_000215_360 Hb_000001_130 Hb_000001_130 Hb_012760_110--Hb_000001_130 Hb_003185_100 Hb_003185_100 Hb_012760_110--Hb_003185_100 Hb_000204_070 Hb_000204_070 Hb_012760_110--Hb_000204_070 Hb_073171_100 Hb_073171_100 Hb_012760_110--Hb_073171_100 Hb_001691_200 Hb_001691_200 Hb_012760_110--Hb_001691_200 Hb_042474_010 Hb_042474_010 Hb_000215_360--Hb_042474_010 Hb_000190_090 Hb_000190_090 Hb_000215_360--Hb_000190_090 Hb_016347_010 Hb_016347_010 Hb_000215_360--Hb_016347_010 Hb_001728_140 Hb_001728_140 Hb_000215_360--Hb_001728_140 Hb_000215_360--Hb_073171_100 Hb_000215_360--Hb_001691_200 Hb_005227_040 Hb_005227_040 Hb_000001_130--Hb_005227_040 Hb_000001_130--Hb_000215_360 Hb_000086_630 Hb_000086_630 Hb_000001_130--Hb_000086_630 Hb_001242_130 Hb_001242_130 Hb_000001_130--Hb_001242_130 Hb_001604_150 Hb_001604_150 Hb_000001_130--Hb_001604_150 Hb_000527_070 Hb_000527_070 Hb_003185_100--Hb_000527_070 Hb_001230_030 Hb_001230_030 Hb_003185_100--Hb_001230_030 Hb_000840_040 Hb_000840_040 Hb_003185_100--Hb_000840_040 Hb_000340_290 Hb_000340_290 Hb_003185_100--Hb_000340_290 Hb_001616_110 Hb_001616_110 Hb_003185_100--Hb_001616_110 Hb_004218_180 Hb_004218_180 Hb_000204_070--Hb_004218_180 Hb_004785_080 Hb_004785_080 Hb_000204_070--Hb_004785_080 Hb_004306_120 Hb_004306_120 Hb_000204_070--Hb_004306_120 Hb_002908_040 Hb_002908_040 Hb_000204_070--Hb_002908_040 Hb_003849_280 Hb_003849_280 Hb_000204_070--Hb_003849_280 Hb_001478_010 Hb_001478_010 Hb_000204_070--Hb_001478_010 Hb_006501_160 Hb_006501_160 Hb_073171_100--Hb_006501_160 Hb_000347_450 Hb_000347_450 Hb_073171_100--Hb_000347_450 Hb_011224_160 Hb_011224_160 Hb_073171_100--Hb_011224_160 Hb_001731_030 Hb_001731_030 Hb_073171_100--Hb_001731_030 Hb_001019_050 Hb_001019_050 Hb_073171_100--Hb_001019_050 Hb_073171_100--Hb_016347_010 Hb_002631_210 Hb_002631_210 Hb_001691_200--Hb_002631_210 Hb_004208_050 Hb_004208_050 Hb_001691_200--Hb_004208_050 Hb_011883_020 Hb_011883_020 Hb_001691_200--Hb_011883_020 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.086775 1.93689 0.773374 0.805941 0.318765 0.677984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.696663 0.946683 0.935683 3.08321 2.55252

CAGE analysis