Hb_005227_040

Information

Type transcription factor
Description TF Family: HB
Location Contig5227: 49368-55372
Sequence    

Annotation

kegg
ID mus:103990577
description homeobox protein knotted-1-like 13
nr
ID CBI21101.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P48000
description Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1
trembl
ID M0TEV7
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46862: 49515-55949 , PASA_asmbl_46863: 52067-52560 , PASA_asmbl_46866: 51056-51428 , PASA_asmbl_46867: 51546-51956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005227_040 0.0 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
2 Hb_000001_130 0.1164175017 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
3 Hb_001604_150 0.1551961591 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
4 Hb_011609_090 0.1567646719 - - protein with unknown function [Ricinus communis]
5 Hb_002235_100 0.1585896142 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 isoform X1 [Jatropha curcas]
6 Hb_000920_130 0.1590883164 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000035_350 0.1635662597 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
8 Hb_005218_080 0.1668672156 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000139_340 0.167867477 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000215_360 0.1705449838 - - Uncharacterized protein isoform 2 [Theobroma cacao]
11 Hb_002232_160 0.1713274867 - - Transaminase mtnE, putative [Ricinus communis]
12 Hb_000086_630 0.1725220013 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
13 Hb_001373_130 0.1743781966 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004123_020 0.1760324297 - - amino acid binding protein, putative [Ricinus communis]
15 Hb_001571_060 0.1768373726 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
16 Hb_001277_050 0.1779166323 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
17 Hb_024468_010 0.1795306083 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
18 Hb_005015_110 0.1799257858 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
19 Hb_094970_010 0.1800366374 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
20 Hb_012760_110 0.1813853907 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005227_040 Hb_005227_040 Hb_000001_130 Hb_000001_130 Hb_005227_040--Hb_000001_130 Hb_001604_150 Hb_001604_150 Hb_005227_040--Hb_001604_150 Hb_011609_090 Hb_011609_090 Hb_005227_040--Hb_011609_090 Hb_002235_100 Hb_002235_100 Hb_005227_040--Hb_002235_100 Hb_000920_130 Hb_000920_130 Hb_005227_040--Hb_000920_130 Hb_000035_350 Hb_000035_350 Hb_005227_040--Hb_000035_350 Hb_000215_360 Hb_000215_360 Hb_000001_130--Hb_000215_360 Hb_012760_110 Hb_012760_110 Hb_000001_130--Hb_012760_110 Hb_000086_630 Hb_000086_630 Hb_000001_130--Hb_000086_630 Hb_001242_130 Hb_001242_130 Hb_000001_130--Hb_001242_130 Hb_000001_130--Hb_001604_150 Hb_002307_310 Hb_002307_310 Hb_001604_150--Hb_002307_310 Hb_031910_020 Hb_031910_020 Hb_001604_150--Hb_031910_020 Hb_002631_180 Hb_002631_180 Hb_001604_150--Hb_002631_180 Hb_001604_150--Hb_000215_360 Hb_000009_050 Hb_000009_050 Hb_001604_150--Hb_000009_050 Hb_004429_020 Hb_004429_020 Hb_001604_150--Hb_004429_020 Hb_004123_020 Hb_004123_020 Hb_011609_090--Hb_004123_020 Hb_002045_060 Hb_002045_060 Hb_011609_090--Hb_002045_060 Hb_015183_060 Hb_015183_060 Hb_011609_090--Hb_015183_060 Hb_001171_050 Hb_001171_050 Hb_011609_090--Hb_001171_050 Hb_000457_290 Hb_000457_290 Hb_011609_090--Hb_000457_290 Hb_011609_090--Hb_001604_150 Hb_020025_010 Hb_020025_010 Hb_002235_100--Hb_020025_010 Hb_000909_080 Hb_000909_080 Hb_002235_100--Hb_000909_080 Hb_000204_070 Hb_000204_070 Hb_002235_100--Hb_000204_070 Hb_001214_050 Hb_001214_050 Hb_002235_100--Hb_001214_050 Hb_034083_020 Hb_034083_020 Hb_002235_100--Hb_034083_020 Hb_000111_110 Hb_000111_110 Hb_002235_100--Hb_000111_110 Hb_001269_370 Hb_001269_370 Hb_000920_130--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_000920_130--Hb_002259_170 Hb_000920_130--Hb_000086_630 Hb_000506_110 Hb_000506_110 Hb_000920_130--Hb_000506_110 Hb_000270_120 Hb_000270_120 Hb_000920_130--Hb_000270_120 Hb_001571_060 Hb_001571_060 Hb_000920_130--Hb_001571_060 Hb_171718_010 Hb_171718_010 Hb_000035_350--Hb_171718_010 Hb_000358_020 Hb_000358_020 Hb_000035_350--Hb_000358_020 Hb_000088_260 Hb_000088_260 Hb_000035_350--Hb_000088_260 Hb_000638_130 Hb_000638_130 Hb_000035_350--Hb_000638_130 Hb_005218_080 Hb_005218_080 Hb_000035_350--Hb_005218_080 Hb_030736_040 Hb_030736_040 Hb_000035_350--Hb_030736_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27266 8.39587 9.17898 4.84641 0.604509 2.34217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58292 11.1354 10.4785 14.422 21.208

CAGE analysis