Hb_000111_110

Information

Type -
Description -
Location Contig111: 140004-145381
Sequence    

Annotation

kegg
ID tcc:TCM_045112
description Uncharacterized protein isoform 1
nr
ID XP_007010961.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FSV5
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_045112 PE=4 SV=1
Gene Ontology
ID GO:0005794
description phosphoserine aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03380: 139804-147004 , PASA_asmbl_03381: 141966-142426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_110 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_001214_050 0.1235618471 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
3 Hb_000676_200 0.1331615637 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
4 Hb_002235_100 0.1361074145 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 isoform X1 [Jatropha curcas]
5 Hb_002631_250 0.14485706 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
6 Hb_000010_290 0.1518748419 - - -
7 Hb_020025_010 0.1543866474 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
8 Hb_000077_150 0.158724573 - - PREDICTED: riboflavin synthase [Jatropha curcas]
9 Hb_155832_010 0.159657785 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_001936_090 0.1616917342 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
11 Hb_000983_070 0.1622013085 - - conserved hypothetical protein [Ricinus communis]
12 Hb_023988_030 0.1632685744 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
13 Hb_113347_010 0.1636060594 - - hypothetical protein CISIN_1g009336mg [Citrus sinensis]
14 Hb_000635_060 0.1637161246 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
15 Hb_009778_060 0.1641424551 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
16 Hb_001723_060 0.1657156405 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
17 Hb_003475_020 0.1659094181 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
18 Hb_002762_110 0.1675851893 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001427_040 0.1679543034 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
20 Hb_002232_390 0.168556066 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]

Gene co-expression network

sample Hb_000111_110 Hb_000111_110 Hb_001214_050 Hb_001214_050 Hb_000111_110--Hb_001214_050 Hb_000676_200 Hb_000676_200 Hb_000111_110--Hb_000676_200 Hb_002235_100 Hb_002235_100 Hb_000111_110--Hb_002235_100 Hb_002631_250 Hb_002631_250 Hb_000111_110--Hb_002631_250 Hb_000010_290 Hb_000010_290 Hb_000111_110--Hb_000010_290 Hb_020025_010 Hb_020025_010 Hb_000111_110--Hb_020025_010 Hb_002762_110 Hb_002762_110 Hb_001214_050--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001214_050--Hb_009778_060 Hb_000077_150 Hb_000077_150 Hb_001214_050--Hb_000077_150 Hb_001723_060 Hb_001723_060 Hb_001214_050--Hb_001723_060 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001195_770 Hb_001195_770 Hb_001214_050--Hb_001195_770 Hb_003475_020 Hb_003475_020 Hb_000676_200--Hb_003475_020 Hb_002374_250 Hb_002374_250 Hb_000676_200--Hb_002374_250 Hb_000676_200--Hb_002631_250 Hb_030131_030 Hb_030131_030 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_002235_100--Hb_020025_010 Hb_000909_080 Hb_000909_080 Hb_002235_100--Hb_000909_080 Hb_000204_070 Hb_000204_070 Hb_002235_100--Hb_000204_070 Hb_002235_100--Hb_001214_050 Hb_034083_020 Hb_034083_020 Hb_002235_100--Hb_034083_020 Hb_002631_250--Hb_030131_030 Hb_001790_080 Hb_001790_080 Hb_002631_250--Hb_001790_080 Hb_002631_250--Hb_003475_020 Hb_029584_070 Hb_029584_070 Hb_002631_250--Hb_029584_070 Hb_001623_280 Hb_001623_280 Hb_002631_250--Hb_001623_280 Hb_002518_120 Hb_002518_120 Hb_000010_290--Hb_002518_120 Hb_000010_290--Hb_000676_200 Hb_001824_090 Hb_001824_090 Hb_000010_290--Hb_001824_090 Hb_003544_010 Hb_003544_010 Hb_000010_290--Hb_003544_010 Hb_000010_290--Hb_003475_020 Hb_003994_110 Hb_003994_110 Hb_000010_290--Hb_003994_110 Hb_000035_480 Hb_000035_480 Hb_020025_010--Hb_000035_480 Hb_020025_010--Hb_000077_150 Hb_002303_020 Hb_002303_020 Hb_020025_010--Hb_002303_020 Hb_003994_160 Hb_003994_160 Hb_020025_010--Hb_003994_160 Hb_020025_010--Hb_001214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653319 0.922171 0.948594 0.88527 0.927545 0.188511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.444388 1.36829 0.723282 1.26862 3.48334

CAGE analysis