Hb_001171_050

Information

Type -
Description -
Location Contig1171: 108281-110136
Sequence    

Annotation

kegg
ID rcu:RCOM_0559900
description hypothetical protein
nr
ID XP_012066125.1
description PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25276 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05295: 108518-110079
cDNA
(Sanger)
(ID:Location)		 005_B12.ab1: 109497-109973

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001171_050 0.0 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
2 Hb_000673_020 0.1149093378 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
3 Hb_000934_190 0.1172312473 - - SER/ARG-rich protein 34A [Theobroma cacao]
4 Hb_015183_060 0.1212797999 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
5 Hb_005656_100 0.1282111888 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002016_080 0.1284384348 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
7 Hb_013405_140 0.1311543487 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
8 Hb_003783_030 0.1334342803 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
9 Hb_011021_040 0.1371618835 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
10 Hb_028487_170 0.1395445081 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
11 Hb_002078_440 0.1397627598 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
12 Hb_000465_070 0.1405212276 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
13 Hb_001604_150 0.1407989092 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
14 Hb_007037_020 0.1411672618 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
15 Hb_002631_180 0.1414451833 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
16 Hb_003360_040 0.1415644994 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
17 Hb_000982_080 0.1415851668 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
18 Hb_000175_030 0.1418352952 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
19 Hb_011671_460 0.1418399567 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
20 Hb_007850_080 0.1419887371 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001171_050 Hb_001171_050 Hb_000673_020 Hb_000673_020 Hb_001171_050--Hb_000673_020 Hb_000934_190 Hb_000934_190 Hb_001171_050--Hb_000934_190 Hb_015183_060 Hb_015183_060 Hb_001171_050--Hb_015183_060 Hb_005656_100 Hb_005656_100 Hb_001171_050--Hb_005656_100 Hb_002016_080 Hb_002016_080 Hb_001171_050--Hb_002016_080 Hb_013405_140 Hb_013405_140 Hb_001171_050--Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000175_030 Hb_000175_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000673_020--Hb_000934_190 Hb_000673_020--Hb_002016_080 Hb_003622_040 Hb_003622_040 Hb_000934_190--Hb_003622_040 Hb_005098_030 Hb_005098_030 Hb_000934_190--Hb_005098_030 Hb_008232_010 Hb_008232_010 Hb_000934_190--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000934_190--Hb_000982_080 Hb_003462_120 Hb_003462_120 Hb_000934_190--Hb_003462_120 Hb_015183_060--Hb_008232_010 Hb_015183_060--Hb_000982_080 Hb_015183_060--Hb_000673_020 Hb_015183_060--Hb_002016_080 Hb_001892_070 Hb_001892_070 Hb_015183_060--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_015183_060--Hb_000920_200 Hb_005656_100--Hb_000673_020 Hb_001005_080 Hb_001005_080 Hb_005656_100--Hb_001005_080 Hb_005656_100--Hb_003880_030 Hb_007850_080 Hb_007850_080 Hb_005656_100--Hb_007850_080 Hb_005656_100--Hb_013405_140 Hb_005656_100--Hb_000175_030 Hb_002016_080--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_003783_030 Hb_003783_030 Hb_002016_080--Hb_003783_030 Hb_013405_140--Hb_011485_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_013405_140--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86119 16.7149 16.7778 15.921 5.40381 4.72342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4131 41.2497 44.4153 34.4794 29.6773

CAGE analysis