Hb_005098_030

Information

Type -
Description -
Location Contig5098: 36718-42996
Sequence    

Annotation

kegg
ID rcu:RCOM_0887890
description argininosuccinate synthase, putative (EC:6.3.4.5)
nr
ID XP_012068472.1
description PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
swissprot
ID Q9SZX3
description Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana GN=At4g24830 PE=2 SV=3
trembl
ID A0A067L9C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03235 PE=3 SV=1
Gene Ontology
ID GO:0009570
description argininosuccinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46235: 36506-42889 , PASA_asmbl_46238: 36340-42889 , PASA_asmbl_46239: 36555-42710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005098_030 0.0 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
2 Hb_000934_190 0.0782748921 - - SER/ARG-rich protein 34A [Theobroma cacao]
3 Hb_004679_050 0.0960698734 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
4 Hb_011671_450 0.1041069496 - - -
5 Hb_002119_130 0.1133729795 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
6 Hb_017131_010 0.1137954411 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_003622_040 0.1178081716 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
8 Hb_002631_010 0.1194574956 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
9 Hb_003360_040 0.1208304252 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
10 Hb_011344_190 0.1213340261 - - PREDICTED: maspardin [Jatropha curcas]
11 Hb_008245_010 0.1226056224 - - PREDICTED: protein NEDD1 [Jatropha curcas]
12 Hb_002799_040 0.1227171425 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
13 Hb_004800_100 0.1234774061 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003462_120 0.1240916884 - - Acidic endochitinase [Theobroma cacao]
15 Hb_000700_040 0.1243306779 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
16 Hb_011671_460 0.1245302064 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
17 Hb_015778_010 0.1260265028 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
18 Hb_001504_330 0.12701115 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
19 Hb_000982_080 0.1278018609 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
20 Hb_001153_120 0.1279613881 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]

Gene co-expression network

sample Hb_005098_030 Hb_005098_030 Hb_000934_190 Hb_000934_190 Hb_005098_030--Hb_000934_190 Hb_004679_050 Hb_004679_050 Hb_005098_030--Hb_004679_050 Hb_011671_450 Hb_011671_450 Hb_005098_030--Hb_011671_450 Hb_002119_130 Hb_002119_130 Hb_005098_030--Hb_002119_130 Hb_017131_010 Hb_017131_010 Hb_005098_030--Hb_017131_010 Hb_003622_040 Hb_003622_040 Hb_005098_030--Hb_003622_040 Hb_000934_190--Hb_003622_040 Hb_000673_020 Hb_000673_020 Hb_000934_190--Hb_000673_020 Hb_008232_010 Hb_008232_010 Hb_000934_190--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000934_190--Hb_000982_080 Hb_003462_120 Hb_003462_120 Hb_000934_190--Hb_003462_120 Hb_056753_010 Hb_056753_010 Hb_004679_050--Hb_056753_010 Hb_000731_260 Hb_000731_260 Hb_004679_050--Hb_000731_260 Hb_008616_070 Hb_008616_070 Hb_004679_050--Hb_008616_070 Hb_004679_050--Hb_011671_450 Hb_002799_040 Hb_002799_040 Hb_004679_050--Hb_002799_040 Hb_000922_390 Hb_000922_390 Hb_011671_450--Hb_000922_390 Hb_011671_460 Hb_011671_460 Hb_011671_450--Hb_011671_460 Hb_000820_090 Hb_000820_090 Hb_011671_450--Hb_000820_090 Hb_001811_030 Hb_001811_030 Hb_011671_450--Hb_001811_030 Hb_007218_120 Hb_007218_120 Hb_002119_130--Hb_007218_120 Hb_003360_040 Hb_003360_040 Hb_002119_130--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_002119_130--Hb_000920_200 Hb_001218_030 Hb_001218_030 Hb_002119_130--Hb_001218_030 Hb_000173_410 Hb_000173_410 Hb_002119_130--Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_002119_130--Hb_000454_090 Hb_017131_010--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_017131_010--Hb_011344_190 Hb_002631_010 Hb_002631_010 Hb_017131_010--Hb_002631_010 Hb_004800_100 Hb_004800_100 Hb_017131_010--Hb_004800_100 Hb_000521_130 Hb_000521_130 Hb_017131_010--Hb_000521_130 Hb_000928_110 Hb_000928_110 Hb_017131_010--Hb_000928_110 Hb_001123_160 Hb_001123_160 Hb_003622_040--Hb_001123_160 Hb_005054_210 Hb_005054_210 Hb_003622_040--Hb_005054_210 Hb_000300_430 Hb_000300_430 Hb_003622_040--Hb_000300_430 Hb_003622_040--Hb_008232_010 Hb_003622_040--Hb_011344_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.17 10.5584 19.0074 30.1797 6.54123 7.84794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.5767 23.566 51.371 32.7597 22.9636

CAGE analysis