Hb_001117_130

Information

Type -
Description -
Location Contig1117: 108835-111335
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00960g
description hypothetical protein
nr
ID XP_012066729.1
description PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5H0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00285 PE=4 SV=1
Gene Ontology
ID GO:0005739
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03540: 109119-110820 , PASA_asmbl_03541: 111002-111309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_130 0.0 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
2 Hb_001159_190 0.1425072737 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_001619_040 0.1454189045 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
4 Hb_000753_230 0.149608098 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
5 Hb_000656_390 0.1572825695 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
6 Hb_000656_310 0.1573877824 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
7 Hb_066920_030 0.1606831102 - - PREDICTED: adagio protein 1 [Jatropha curcas]
8 Hb_032717_060 0.1621176412 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
9 Hb_000649_150 0.1625668583 - - PREDICTED: uncharacterized protein LOC105634115 [Jatropha curcas]
10 Hb_002027_160 0.1650980722 - - sugar transporter, putative [Ricinus communis]
11 Hb_000061_230 0.1663163571 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
12 Hb_001411_140 0.167735016 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
13 Hb_000172_100 0.1683729173 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
14 Hb_000226_080 0.1684153877 - - prephenate dehydrogenase, putative [Ricinus communis]
15 Hb_000700_080 0.1689134078 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005706_040 0.1694270172 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
17 Hb_005489_070 0.1700936385 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
18 Hb_001723_100 0.1707790988 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
19 Hb_004137_020 0.1721296464 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]
20 Hb_001404_110 0.1723584713 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001117_130 Hb_001117_130 Hb_001159_190 Hb_001159_190 Hb_001117_130--Hb_001159_190 Hb_001619_040 Hb_001619_040 Hb_001117_130--Hb_001619_040 Hb_000753_230 Hb_000753_230 Hb_001117_130--Hb_000753_230 Hb_000656_390 Hb_000656_390 Hb_001117_130--Hb_000656_390 Hb_000656_310 Hb_000656_310 Hb_001117_130--Hb_000656_310 Hb_066920_030 Hb_066920_030 Hb_001117_130--Hb_066920_030 Hb_001404_110 Hb_001404_110 Hb_001159_190--Hb_001404_110 Hb_000948_150 Hb_000948_150 Hb_001159_190--Hb_000948_150 Hb_001405_070 Hb_001405_070 Hb_001159_190--Hb_001405_070 Hb_032717_060 Hb_032717_060 Hb_001159_190--Hb_032717_060 Hb_000417_200 Hb_000417_200 Hb_001159_190--Hb_000417_200 Hb_001159_190--Hb_066920_030 Hb_000152_330 Hb_000152_330 Hb_001619_040--Hb_000152_330 Hb_000226_080 Hb_000226_080 Hb_001619_040--Hb_000226_080 Hb_024468_010 Hb_024468_010 Hb_001619_040--Hb_024468_010 Hb_005356_040 Hb_005356_040 Hb_001619_040--Hb_005356_040 Hb_000649_150 Hb_000649_150 Hb_001619_040--Hb_000649_150 Hb_000173_470 Hb_000173_470 Hb_000753_230--Hb_000173_470 Hb_003688_180 Hb_003688_180 Hb_000753_230--Hb_003688_180 Hb_000753_230--Hb_066920_030 Hb_038574_010 Hb_038574_010 Hb_000753_230--Hb_038574_010 Hb_017387_010 Hb_017387_010 Hb_000753_230--Hb_017387_010 Hb_020178_040 Hb_020178_040 Hb_000753_230--Hb_020178_040 Hb_000951_130 Hb_000951_130 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_001723_100 Hb_001723_100 Hb_000656_390--Hb_001723_100 Hb_000656_390--Hb_000152_330 Hb_002272_030 Hb_002272_030 Hb_000656_390--Hb_002272_030 Hb_001226_140 Hb_001226_140 Hb_000656_310--Hb_001226_140 Hb_000465_280 Hb_000465_280 Hb_000656_310--Hb_000465_280 Hb_000504_180 Hb_000504_180 Hb_000656_310--Hb_000504_180 Hb_022092_030 Hb_022092_030 Hb_000656_310--Hb_022092_030 Hb_001080_300 Hb_001080_300 Hb_000656_310--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_000656_310--Hb_138585_080 Hb_066920_030--Hb_001404_110 Hb_066920_030--Hb_001723_100 Hb_005977_070 Hb_005977_070 Hb_066920_030--Hb_005977_070 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_002830_010 Hb_002830_010 Hb_066920_030--Hb_002830_010 Hb_000347_400 Hb_000347_400 Hb_066920_030--Hb_000347_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153604 2.04 0.432999 1.93263 0.387006 0.596892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.495743 1.13737 1.81213 0.625024 1.74708

CAGE analysis