Hb_003090_100

Information

Type -
Description -
Location Contig3090: 138885-140876
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09510g
description POPTRDRAFT_653060; hypothetical protein
nr
ID XP_012087963.1
description PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25084 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase march2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32640: 139094-141057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_100 0.0 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
2 Hb_007904_130 0.1222330144 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_001840_090 0.1268161944 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
4 Hb_003544_030 0.1309213793 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
5 Hb_001642_070 0.1328762574 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
6 Hb_083799_010 0.1370120865 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000600_060 0.1378287549 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
8 Hb_006922_050 0.1385147932 - - PREDICTED: dipeptidyl peptidase 8 [Jatropha curcas]
9 Hb_146051_010 0.1387512344 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_000327_250 0.1396721299 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
11 Hb_001269_140 0.1409763922 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
12 Hb_028872_110 0.1429385733 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
13 Hb_000140_480 0.1436582733 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
14 Hb_000152_660 0.1443122059 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
15 Hb_000676_190 0.1446780102 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
16 Hb_007409_040 0.1448226644 - - actin family protein [Populus trichocarpa]
17 Hb_001160_070 0.1471168143 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
18 Hb_001434_080 0.1477144526 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
19 Hb_005215_020 0.1508031364 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
20 Hb_032969_020 0.1516693281 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003090_100 Hb_003090_100 Hb_007904_130 Hb_007904_130 Hb_003090_100--Hb_007904_130 Hb_001840_090 Hb_001840_090 Hb_003090_100--Hb_001840_090 Hb_003544_030 Hb_003544_030 Hb_003090_100--Hb_003544_030 Hb_001642_070 Hb_001642_070 Hb_003090_100--Hb_001642_070 Hb_083799_010 Hb_083799_010 Hb_003090_100--Hb_083799_010 Hb_000600_060 Hb_000600_060 Hb_003090_100--Hb_000600_060 Hb_000402_190 Hb_000402_190 Hb_007904_130--Hb_000402_190 Hb_010863_010 Hb_010863_010 Hb_007904_130--Hb_010863_010 Hb_007904_130--Hb_001642_070 Hb_007904_130--Hb_003544_030 Hb_002153_030 Hb_002153_030 Hb_007904_130--Hb_002153_030 Hb_001170_030 Hb_001170_030 Hb_007904_130--Hb_001170_030 Hb_002900_090 Hb_002900_090 Hb_001840_090--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_001840_090--Hb_005000_260 Hb_006922_010 Hb_006922_010 Hb_001840_090--Hb_006922_010 Hb_000739_100 Hb_000739_100 Hb_001840_090--Hb_000739_100 Hb_145880_010 Hb_145880_010 Hb_001840_090--Hb_145880_010 Hb_003071_020 Hb_003071_020 Hb_001840_090--Hb_003071_020 Hb_000327_250 Hb_000327_250 Hb_003544_030--Hb_000327_250 Hb_005663_110 Hb_005663_110 Hb_003544_030--Hb_005663_110 Hb_001434_080 Hb_001434_080 Hb_003544_030--Hb_001434_080 Hb_016347_010 Hb_016347_010 Hb_003544_030--Hb_016347_010 Hb_006452_120 Hb_006452_120 Hb_003544_030--Hb_006452_120 Hb_017387_010 Hb_017387_010 Hb_003544_030--Hb_017387_010 Hb_004450_070 Hb_004450_070 Hb_001642_070--Hb_004450_070 Hb_001642_070--Hb_016347_010 Hb_001642_070--Hb_000327_250 Hb_019280_010 Hb_019280_010 Hb_001642_070--Hb_019280_010 Hb_000363_040 Hb_000363_040 Hb_001642_070--Hb_000363_040 Hb_000209_100 Hb_000209_100 Hb_001642_070--Hb_000209_100 Hb_002272_170 Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_000395_220 Hb_000395_220 Hb_083799_010--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_007426_140 Hb_007426_140 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_000460_080 Hb_000460_080 Hb_000600_060--Hb_000460_080 Hb_000963_040 Hb_000963_040 Hb_000600_060--Hb_000963_040 Hb_000120_280 Hb_000120_280 Hb_000600_060--Hb_000120_280 Hb_000352_300 Hb_000352_300 Hb_000600_060--Hb_000352_300 Hb_001141_310 Hb_001141_310 Hb_000600_060--Hb_001141_310 Hb_000477_050 Hb_000477_050 Hb_000600_060--Hb_000477_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.05225 5.61534 2.81197 7.28379 4.2265 1.57512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83167 2.73491 4.88003 10.5324 2.39004

CAGE analysis