Hb_001840_090

Information

Type -
Description -
Location Contig1840: 160336-163416
Sequence    

Annotation

kegg
ID rcu:RCOM_0814300
description Phytosulfokine receptor precursor, putative (EC:2.7.12.2 1.3.1.74)
nr
ID XP_002518809.1
description Phytosulfokine receptor precursor, putative [Ricinus communis]
swissprot
ID Q9ZVR7
description Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4
trembl
ID B9RY42
description Phytosulfokine receptor, putative OS=Ricinus communis GN=RCOM_0814300 PE=4 SV=1
Gene Ontology
ID GO:0004672
description phytosulfokine receptor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18027: 160008-163599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001840_090 0.0 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
2 Hb_002900_090 0.0725533059 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
3 Hb_005000_260 0.0841817507 - - recA family protein [Populus trichocarpa]
4 Hb_006922_010 0.0891570082 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
5 Hb_000739_100 0.0946159149 - - ku P80 DNA helicase, putative [Ricinus communis]
6 Hb_145880_010 0.0978917633 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_003071_020 0.0999499299 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
8 Hb_033772_030 0.1024881379 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
9 Hb_000317_370 0.1057760952 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
10 Hb_000140_480 0.106250229 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
11 Hb_024621_040 0.1082215288 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
12 Hb_000856_180 0.1093738836 - - calcium-dependent protein kinase [Hevea brasiliensis]
13 Hb_009627_030 0.1094361825 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
14 Hb_000363_400 0.1103690784 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
15 Hb_003370_030 0.1104852398 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
16 Hb_000107_660 0.1115901997 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
17 Hb_008160_030 0.1146477655 - - DNA binding protein, putative [Ricinus communis]
18 Hb_012490_080 0.1149788445 - - threonine synthase, putative [Ricinus communis]
19 Hb_010381_030 0.115552656 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
20 Hb_005207_050 0.1157591311 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]

Gene co-expression network

sample Hb_001840_090 Hb_001840_090 Hb_002900_090 Hb_002900_090 Hb_001840_090--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_001840_090--Hb_005000_260 Hb_006922_010 Hb_006922_010 Hb_001840_090--Hb_006922_010 Hb_000739_100 Hb_000739_100 Hb_001840_090--Hb_000739_100 Hb_145880_010 Hb_145880_010 Hb_001840_090--Hb_145880_010 Hb_003071_020 Hb_003071_020 Hb_001840_090--Hb_003071_020 Hb_033772_030 Hb_033772_030 Hb_002900_090--Hb_033772_030 Hb_002900_090--Hb_006922_010 Hb_002900_090--Hb_005000_260 Hb_002900_090--Hb_000739_100 Hb_003464_090 Hb_003464_090 Hb_002900_090--Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_002900_090--Hb_007163_120 Hb_005000_260--Hb_006922_010 Hb_003370_030 Hb_003370_030 Hb_005000_260--Hb_003370_030 Hb_005000_260--Hb_000739_100 Hb_001408_040 Hb_001408_040 Hb_005000_260--Hb_001408_040 Hb_005000_260--Hb_007163_120 Hb_006922_010--Hb_033772_030 Hb_006922_010--Hb_003370_030 Hb_006922_010--Hb_007163_120 Hb_006922_010--Hb_000739_100 Hb_001157_090 Hb_001157_090 Hb_000739_100--Hb_001157_090 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_002686_030 Hb_002686_030 Hb_000739_100--Hb_002686_030 Hb_009083_070 Hb_009083_070 Hb_145880_010--Hb_009083_070 Hb_001318_020 Hb_001318_020 Hb_145880_010--Hb_001318_020 Hb_184798_080 Hb_184798_080 Hb_145880_010--Hb_184798_080 Hb_145880_010--Hb_006922_010 Hb_008160_030 Hb_008160_030 Hb_145880_010--Hb_008160_030 Hb_001205_200 Hb_001205_200 Hb_145880_010--Hb_001205_200 Hb_000856_180 Hb_000856_180 Hb_003071_020--Hb_000856_180 Hb_003071_020--Hb_006922_010 Hb_000236_410 Hb_000236_410 Hb_003071_020--Hb_000236_410 Hb_002046_020 Hb_002046_020 Hb_003071_020--Hb_002046_020 Hb_001019_180 Hb_001019_180 Hb_003071_020--Hb_001019_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.26349 6.18424 2.77092 4.63653 2.83381 2.88597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32797 3.84154 4.65327 6.72773 1.75379

CAGE analysis