Hb_052689_010

Information

Type -
Description -
Location Contig52689: 42-1813
Sequence    

Annotation

kegg
ID egr:104432002
description probable mediator of RNA polymerase II transcription subunit 37c
nr
ID AAB65162.1
description heat shock cognate protein [Solanum commersonii]
swissprot
ID Q9LHA8
description Probable mediator of RNA polymerase II transcription subunit 37c OS=Arabidopsis thaliana GN=MED37C PE=1 SV=1
trembl
ID A0A0D3HJ33
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0005524
description heat shock cognate 70 kda protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052689_010 0.0 - - heat shock cognate protein [Solanum commersonii]
2 Hb_001916_070 0.1783470356 - - PREDICTED: phytochrome C [Jatropha curcas]
3 Hb_003688_160 0.1795882799 - - Presenilin-like family protein [Populus trichocarpa]
4 Hb_000251_090 0.1876644721 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
5 Hb_089206_010 0.1912570811 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_003032_020 0.1917885417 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
7 Hb_007820_010 0.1952625237 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
8 Hb_006268_020 0.1974784755 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
9 Hb_007064_010 0.2012370768 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
10 Hb_004846_160 0.2065472393 - - -
11 Hb_008695_140 0.2074656266 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
12 Hb_000827_060 0.2105433562 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
13 Hb_174473_010 0.2113913758 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
14 Hb_080952_010 0.2122339574 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
15 Hb_004899_060 0.2126846564 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
16 Hb_001242_090 0.2136908734 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
17 Hb_002316_160 0.2142735474 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
18 Hb_003910_060 0.2157980826 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
19 Hb_066487_010 0.2176746724 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003781_010 0.219333366 - - PREDICTED: histone H2AX [Eucalyptus grandis]

Gene co-expression network

sample Hb_052689_010 Hb_052689_010 Hb_001916_070 Hb_001916_070 Hb_052689_010--Hb_001916_070 Hb_003688_160 Hb_003688_160 Hb_052689_010--Hb_003688_160 Hb_000251_090 Hb_000251_090 Hb_052689_010--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_052689_010--Hb_089206_010 Hb_003032_020 Hb_003032_020 Hb_052689_010--Hb_003032_020 Hb_007820_010 Hb_007820_010 Hb_052689_010--Hb_007820_010 Hb_140627_020 Hb_140627_020 Hb_001916_070--Hb_140627_020 Hb_002316_160 Hb_002316_160 Hb_001916_070--Hb_002316_160 Hb_002235_200 Hb_002235_200 Hb_001916_070--Hb_002235_200 Hb_013358_010 Hb_013358_010 Hb_001916_070--Hb_013358_010 Hb_010180_060 Hb_010180_060 Hb_001916_070--Hb_010180_060 Hb_023344_160 Hb_023344_160 Hb_001916_070--Hb_023344_160 Hb_004899_060 Hb_004899_060 Hb_003688_160--Hb_004899_060 Hb_174473_010 Hb_174473_010 Hb_003688_160--Hb_174473_010 Hb_001242_090 Hb_001242_090 Hb_003688_160--Hb_001242_090 Hb_003688_160--Hb_000251_090 Hb_003688_160--Hb_089206_010 Hb_073452_010 Hb_073452_010 Hb_000251_090--Hb_073452_010 Hb_002205_190 Hb_002205_190 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140 Hb_183443_010 Hb_183443_010 Hb_089206_010--Hb_183443_010 Hb_063943_010 Hb_063943_010 Hb_089206_010--Hb_063943_010 Hb_000357_120 Hb_000357_120 Hb_089206_010--Hb_000357_120 Hb_004097_120 Hb_004097_120 Hb_089206_010--Hb_004097_120 Hb_003032_020--Hb_007820_010 Hb_027472_070 Hb_027472_070 Hb_003032_020--Hb_027472_070 Hb_002099_080 Hb_002099_080 Hb_003032_020--Hb_002099_080 Hb_000352_190 Hb_000352_190 Hb_003032_020--Hb_000352_190 Hb_002063_020 Hb_002063_020 Hb_003032_020--Hb_002063_020 Hb_000366_040 Hb_000366_040 Hb_003032_020--Hb_000366_040 Hb_007820_010--Hb_002099_080 Hb_002055_040 Hb_002055_040 Hb_007820_010--Hb_002055_040 Hb_007820_010--Hb_000366_040 Hb_000204_120 Hb_000204_120 Hb_007820_010--Hb_000204_120 Hb_007820_010--Hb_000352_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89282 4.12565 1.77155 2.99793 1.75423 3.12598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.831798 0.340276 12.9547 5.39541 7.3204

CAGE analysis