Hb_174473_010

Information

Type -
Description -
Location Contig174473: 583-1236
Sequence    

Annotation

kegg
ID vvi:104877435
description uncharacterized LOC104877435
nr
ID XP_012453468.1
description PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0P2S3
description Sal-like protein 1 OS=Gossypium arboreum GN=F383_26146 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174473_010 0.0 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
2 Hb_010427_010 0.1667735958 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
3 Hb_003781_010 0.1703214382 - - PREDICTED: histone H2AX [Eucalyptus grandis]
4 Hb_000159_100 0.1760340505 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
5 Hb_004224_020 0.1781941442 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
6 Hb_003688_160 0.1804219827 - - Presenilin-like family protein [Populus trichocarpa]
7 Hb_002099_080 0.1824458912 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
8 Hb_007820_010 0.1851577185 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
9 Hb_002667_050 0.1857657845 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
10 Hb_066487_010 0.1858533886 - - conserved hypothetical protein [Ricinus communis]
11 Hb_187953_010 0.1897932476 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
12 Hb_183443_010 0.1899813127 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
13 Hb_028912_040 0.1899893749 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
14 Hb_004020_020 0.1966284734 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
15 Hb_001005_050 0.1989277197 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
16 Hb_006660_010 0.1996787448 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
17 Hb_003294_090 0.1998553608 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002055_040 0.2008154989 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
19 Hb_003910_060 0.2028139684 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
20 Hb_001703_120 0.2033718137 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_174473_010 Hb_174473_010 Hb_010427_010 Hb_010427_010 Hb_174473_010--Hb_010427_010 Hb_003781_010 Hb_003781_010 Hb_174473_010--Hb_003781_010 Hb_000159_100 Hb_000159_100 Hb_174473_010--Hb_000159_100 Hb_004224_020 Hb_004224_020 Hb_174473_010--Hb_004224_020 Hb_003688_160 Hb_003688_160 Hb_174473_010--Hb_003688_160 Hb_002099_080 Hb_002099_080 Hb_174473_010--Hb_002099_080 Hb_006660_010 Hb_006660_010 Hb_010427_010--Hb_006660_010 Hb_003449_070 Hb_003449_070 Hb_010427_010--Hb_003449_070 Hb_011310_160 Hb_011310_160 Hb_010427_010--Hb_011310_160 Hb_000212_310 Hb_000212_310 Hb_010427_010--Hb_000212_310 Hb_003294_090 Hb_003294_090 Hb_010427_010--Hb_003294_090 Hb_005679_050 Hb_005679_050 Hb_010427_010--Hb_005679_050 Hb_000022_160 Hb_000022_160 Hb_003781_010--Hb_000022_160 Hb_006909_010 Hb_006909_010 Hb_003781_010--Hb_006909_010 Hb_003910_060 Hb_003910_060 Hb_003781_010--Hb_003910_060 Hb_006274_050 Hb_006274_050 Hb_003781_010--Hb_006274_050 Hb_004411_060 Hb_004411_060 Hb_003781_010--Hb_004411_060 Hb_000031_110 Hb_000031_110 Hb_000159_100--Hb_000031_110 Hb_000872_010 Hb_000872_010 Hb_000159_100--Hb_000872_010 Hb_000159_100--Hb_011310_160 Hb_000159_100--Hb_003294_090 Hb_025193_040 Hb_025193_040 Hb_000159_100--Hb_025193_040 Hb_002667_050 Hb_002667_050 Hb_000159_100--Hb_002667_050 Hb_187953_010 Hb_187953_010 Hb_004224_020--Hb_187953_010 Hb_000470_080 Hb_000470_080 Hb_004224_020--Hb_000470_080 Hb_028912_040 Hb_028912_040 Hb_004224_020--Hb_028912_040 Hb_004224_020--Hb_010427_010 Hb_000236_310 Hb_000236_310 Hb_004224_020--Hb_000236_310 Hb_004224_020--Hb_006660_010 Hb_004899_060 Hb_004899_060 Hb_003688_160--Hb_004899_060 Hb_052689_010 Hb_052689_010 Hb_003688_160--Hb_052689_010 Hb_001242_090 Hb_001242_090 Hb_003688_160--Hb_001242_090 Hb_000251_090 Hb_000251_090 Hb_003688_160--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_003688_160--Hb_089206_010 Hb_007820_010 Hb_007820_010 Hb_002099_080--Hb_007820_010 Hb_002055_040 Hb_002055_040 Hb_002099_080--Hb_002055_040 Hb_002099_080--Hb_002667_050 Hb_009296_040 Hb_009296_040 Hb_002099_080--Hb_009296_040 Hb_002063_020 Hb_002063_020 Hb_002099_080--Hb_002063_020 Hb_000388_090 Hb_000388_090 Hb_002099_080--Hb_000388_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04327 0.435841 0.393839 1.15735 0.668202 2.04503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0890484 0.34998 2.22982 1.71422 2.05816

CAGE analysis