Hb_000251_090

Information

Type -
Description -
Location Contig251: 109443-114988
Sequence    

Annotation

kegg
ID rcu:RCOM_0634200
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_012072053.1
description PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
swissprot
ID Q9SVV6
description Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1
trembl
ID A0A067L0A9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04573 PE=4 SV=1
Gene Ontology
ID GO:0016021
description two-pore potassium channel 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26239: 114198-114539 , PASA_asmbl_26242: 113881-114188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_090 0.0 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
2 Hb_073452_010 0.1478785552 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_002205_190 0.1587837152 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
4 Hb_000567_380 0.1604118474 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
5 Hb_000011_330 0.1620629462 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
6 Hb_001946_410 0.1650042003 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
7 Hb_008695_140 0.1688778424 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
8 Hb_090855_010 0.1724845847 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_000442_080 0.1824703282 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
10 Hb_003688_160 0.1839997899 - - Presenilin-like family protein [Populus trichocarpa]
11 Hb_052689_010 0.1876644721 - - heat shock cognate protein [Solanum commersonii]
12 Hb_003020_050 0.1895596356 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_004899_060 0.1918782328 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
14 Hb_006472_020 0.1936678794 - - heat shock protein [Cicer arietinum]
15 Hb_007590_070 0.1954898924 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
16 Hb_046198_010 0.1955712992 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
17 Hb_080952_010 0.1971869446 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
18 Hb_023755_010 0.2018523062 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_027402_140 0.2025466481 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
20 Hb_010874_020 0.2043992714 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]

Gene co-expression network

sample Hb_000251_090 Hb_000251_090 Hb_073452_010 Hb_073452_010 Hb_000251_090--Hb_073452_010 Hb_002205_190 Hb_002205_190 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140 Hb_000442_080 Hb_000442_080 Hb_073452_010--Hb_000442_080 Hb_073452_010--Hb_000011_330 Hb_073452_010--Hb_002205_190 Hb_073452_010--Hb_008695_140 Hb_073452_010--Hb_000567_380 Hb_002205_190--Hb_000011_330 Hb_002205_190--Hb_000567_380 Hb_004785_140 Hb_004785_140 Hb_002205_190--Hb_004785_140 Hb_003976_030 Hb_003976_030 Hb_002205_190--Hb_003976_030 Hb_002205_190--Hb_008695_140 Hb_002496_040 Hb_002496_040 Hb_002205_190--Hb_002496_040 Hb_000567_380--Hb_000011_330 Hb_000567_380--Hb_008695_140 Hb_000567_380--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000567_380--Hb_012325_020 Hb_050622_050 Hb_050622_050 Hb_000567_380--Hb_050622_050 Hb_000011_330--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_001946_410--Hb_002205_190 Hb_001946_410--Hb_000567_380 Hb_000116_010 Hb_000116_010 Hb_001946_410--Hb_000116_010 Hb_001946_410--Hb_008695_140 Hb_001946_410--Hb_000011_330 Hb_001946_410--Hb_004785_140 Hb_007765_020 Hb_007765_020 Hb_008695_140--Hb_007765_020 Hb_008695_140--Hb_000011_330 Hb_008695_140--Hb_004785_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.2999 5.36999 2.46838 2.84113 7.4532 4.00011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39981 1.14674 19.5281 6.27096 4.7383

CAGE analysis