Hb_073452_010

Information

Type -
Description -
Location Contig73452: 5981-7577
Sequence    

Annotation

kegg
ID rcu:RCOM_0311770
description chaperonin-60kD, ch60, putative
nr
ID XP_012068975.1
description PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q93ZM7
description Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=2 SV=2
trembl
ID A0A067L0N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24767 PE=3 SV=1
Gene Ontology
ID GO:0005774
description chaperonin cpn60-like mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073452_010 0.0 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_000442_080 0.1214739067 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
3 Hb_000011_330 0.1473350914 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
4 Hb_000251_090 0.1478785552 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
5 Hb_002205_190 0.1495375922 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
6 Hb_008695_140 0.1531123635 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
7 Hb_000567_380 0.1565635425 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
8 Hb_000832_020 0.158107051 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
9 Hb_022148_010 0.1613439192 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
10 Hb_000032_100 0.1681059346 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
11 Hb_006922_030 0.1685056549 - - ubiquitin, putative [Ricinus communis]
12 Hb_027402_140 0.1702569364 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
13 Hb_046198_010 0.1740422426 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
14 Hb_001266_060 0.1747239021 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
15 Hb_000362_120 0.1775081169 - - glutamate receptor 2 plant, putative [Ricinus communis]
16 Hb_000335_020 0.1775654921 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_010436_030 0.1775858298 - - Ribonuclease III, putative [Ricinus communis]
18 Hb_038011_010 0.1776626363 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
19 Hb_001817_020 0.1777299934 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
20 Hb_048116_010 0.1784333098 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]

Gene co-expression network

sample Hb_073452_010 Hb_073452_010 Hb_000442_080 Hb_000442_080 Hb_073452_010--Hb_000442_080 Hb_000011_330 Hb_000011_330 Hb_073452_010--Hb_000011_330 Hb_000251_090 Hb_000251_090 Hb_073452_010--Hb_000251_090 Hb_002205_190 Hb_002205_190 Hb_073452_010--Hb_002205_190 Hb_008695_140 Hb_008695_140 Hb_073452_010--Hb_008695_140 Hb_000567_380 Hb_000567_380 Hb_073452_010--Hb_000567_380 Hb_000832_020 Hb_000832_020 Hb_000442_080--Hb_000832_020 Hb_000442_080--Hb_000011_330 Hb_002217_300 Hb_002217_300 Hb_000442_080--Hb_002217_300 Hb_001266_060 Hb_001266_060 Hb_000442_080--Hb_001266_060 Hb_000442_080--Hb_002205_190 Hb_000011_330--Hb_000567_380 Hb_000011_330--Hb_002205_190 Hb_003976_030 Hb_003976_030 Hb_000011_330--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_000251_090--Hb_002205_190 Hb_000251_090--Hb_000567_380 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_000251_090--Hb_008695_140 Hb_002205_190--Hb_000567_380 Hb_004785_140 Hb_004785_140 Hb_002205_190--Hb_004785_140 Hb_002205_190--Hb_003976_030 Hb_002205_190--Hb_008695_140 Hb_002496_040 Hb_002496_040 Hb_002205_190--Hb_002496_040 Hb_008695_140--Hb_000567_380 Hb_007765_020 Hb_007765_020 Hb_008695_140--Hb_007765_020 Hb_008695_140--Hb_000011_330 Hb_008695_140--Hb_001946_410 Hb_008695_140--Hb_004785_140 Hb_000567_380--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000567_380--Hb_012325_020 Hb_050622_050 Hb_050622_050 Hb_000567_380--Hb_050622_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.016 2.14791 1.43589 1.66155 4.66865 6.05795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7237 1.35406 13.4547 3.24983 3.97031

CAGE analysis