Hb_003688_160

Information

Type -
Description -
Location Contig3688: 108507-109237
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06920g
description Presenilin-like family protein
nr
ID XP_006374407.1
description Presenilin-like family protein [Populus trichocarpa]
swissprot
ID Q9SIK7
description Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1
trembl
ID B9N053
description Presenilin OS=Populus trichocarpa GN=POPTR_0015s06920g PE=3 SV=1
Gene Ontology
ID GO:0012505
description presenilin-like protein at2g29900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_160 0.0 - - Presenilin-like family protein [Populus trichocarpa]
2 Hb_004899_060 0.170855103 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
3 Hb_052689_010 0.1795882799 - - heat shock cognate protein [Solanum commersonii]
4 Hb_174473_010 0.1804219827 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
5 Hb_001242_090 0.1835466691 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
6 Hb_000251_090 0.1839997899 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
7 Hb_089206_010 0.1877081838 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
8 Hb_183443_010 0.200639632 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
9 Hb_073452_010 0.2145362769 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_003688_170 0.218210534 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
11 Hb_005976_050 0.2259411116 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
12 Hb_104812_010 0.2271983743 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
13 Hb_090855_010 0.2377277091 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_003881_050 0.2380572225 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
15 Hb_007590_070 0.2405344453 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
16 Hb_010427_010 0.2410293884 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
17 Hb_066487_010 0.2415054304 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005211_160 0.241841939 - - Protein PNS1, putative [Ricinus communis]
19 Hb_008695_140 0.2421429279 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
20 Hb_008159_010 0.2422154069 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]

Gene co-expression network

sample Hb_003688_160 Hb_003688_160 Hb_004899_060 Hb_004899_060 Hb_003688_160--Hb_004899_060 Hb_052689_010 Hb_052689_010 Hb_003688_160--Hb_052689_010 Hb_174473_010 Hb_174473_010 Hb_003688_160--Hb_174473_010 Hb_001242_090 Hb_001242_090 Hb_003688_160--Hb_001242_090 Hb_000251_090 Hb_000251_090 Hb_003688_160--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_003688_160--Hb_089206_010 Hb_001366_120 Hb_001366_120 Hb_004899_060--Hb_001366_120 Hb_005976_050 Hb_005976_050 Hb_004899_060--Hb_005976_050 Hb_001143_190 Hb_001143_190 Hb_004899_060--Hb_001143_190 Hb_031862_130 Hb_031862_130 Hb_004899_060--Hb_031862_130 Hb_008695_140 Hb_008695_140 Hb_004899_060--Hb_008695_140 Hb_001916_070 Hb_001916_070 Hb_052689_010--Hb_001916_070 Hb_052689_010--Hb_000251_090 Hb_052689_010--Hb_089206_010 Hb_003032_020 Hb_003032_020 Hb_052689_010--Hb_003032_020 Hb_007820_010 Hb_007820_010 Hb_052689_010--Hb_007820_010 Hb_010427_010 Hb_010427_010 Hb_174473_010--Hb_010427_010 Hb_003781_010 Hb_003781_010 Hb_174473_010--Hb_003781_010 Hb_000159_100 Hb_000159_100 Hb_174473_010--Hb_000159_100 Hb_004224_020 Hb_004224_020 Hb_174473_010--Hb_004224_020 Hb_002099_080 Hb_002099_080 Hb_174473_010--Hb_002099_080 Hb_073452_010 Hb_073452_010 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_001242_090--Hb_000251_090 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170 Hb_000251_090--Hb_073452_010 Hb_002205_190 Hb_002205_190 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_000251_090--Hb_008695_140 Hb_183443_010 Hb_183443_010 Hb_089206_010--Hb_183443_010 Hb_063943_010 Hb_063943_010 Hb_089206_010--Hb_063943_010 Hb_000357_120 Hb_000357_120 Hb_089206_010--Hb_000357_120 Hb_004097_120 Hb_004097_120 Hb_089206_010--Hb_004097_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77646 0.383639 0.395977 1.20807 1.09518 1.07925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109089 0.0857249 3.71864 1.5166 1.80923

CAGE analysis