Hb_001366_120

Information

Type -
Description -
Location Contig1366: 116079-117225
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G1213001
description hypothetical protein
nr
ID ACN34817.1
description unknown [Zea mays]
swissprot
ID -
description -
trembl
ID C0PI01
description Uncharacterized protein OS=Zea mays GN=LOC100273986 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10077: 116078-117165
cDNA
(Sanger)
(ID:Location)		 051_A19.ab1: 116078-117165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_120 0.0 - - unknown [Zea mays]
2 Hb_004899_060 0.1402821663 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
3 Hb_005976_050 0.1852923222 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
4 Hb_000069_170 0.1898156686 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
5 Hb_001606_080 0.1938748291 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
6 Hb_078897_010 0.198649171 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
7 Hb_031862_130 0.2060460614 - - transcription factor, putative [Ricinus communis]
8 Hb_002102_020 0.2172242005 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
9 Hb_005211_160 0.2174562231 - - Protein PNS1, putative [Ricinus communis]
10 Hb_000853_400 0.2217657132 - - PREDICTED: CTP synthase [Jatropha curcas]
11 Hb_000397_120 0.2226193658 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
12 Hb_000215_080 0.2243265884 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
13 Hb_008778_010 0.2243336509 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_008695_140 0.224809122 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
15 Hb_000069_710 0.2285135235 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
16 Hb_000326_040 0.2306490251 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
17 Hb_010174_080 0.2322281318 - - -
18 Hb_000723_200 0.2334296922 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
19 Hb_001143_190 0.2337794901 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
20 Hb_000270_520 0.2362275675 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_120 Hb_001366_120 Hb_004899_060 Hb_004899_060 Hb_001366_120--Hb_004899_060 Hb_005976_050 Hb_005976_050 Hb_001366_120--Hb_005976_050 Hb_000069_170 Hb_000069_170 Hb_001366_120--Hb_000069_170 Hb_001606_080 Hb_001606_080 Hb_001366_120--Hb_001606_080 Hb_078897_010 Hb_078897_010 Hb_001366_120--Hb_078897_010 Hb_031862_130 Hb_031862_130 Hb_001366_120--Hb_031862_130 Hb_004899_060--Hb_005976_050 Hb_003688_160 Hb_003688_160 Hb_004899_060--Hb_003688_160 Hb_001143_190 Hb_001143_190 Hb_004899_060--Hb_001143_190 Hb_004899_060--Hb_031862_130 Hb_008695_140 Hb_008695_140 Hb_004899_060--Hb_008695_140 Hb_010427_010 Hb_010427_010 Hb_005976_050--Hb_010427_010 Hb_000212_310 Hb_000212_310 Hb_005976_050--Hb_000212_310 Hb_000031_150 Hb_000031_150 Hb_005976_050--Hb_000031_150 Hb_007904_160 Hb_007904_160 Hb_005976_050--Hb_007904_160 Hb_000933_060 Hb_000933_060 Hb_005976_050--Hb_000933_060 Hb_000330_100 Hb_000330_100 Hb_005976_050--Hb_000330_100 Hb_000069_170--Hb_031862_130 Hb_002194_090 Hb_002194_090 Hb_000069_170--Hb_002194_090 Hb_000215_080 Hb_000215_080 Hb_000069_170--Hb_000215_080 Hb_001662_060 Hb_001662_060 Hb_000069_170--Hb_001662_060 Hb_007765_020 Hb_007765_020 Hb_000069_170--Hb_007765_020 Hb_000069_170--Hb_008695_140 Hb_001606_080--Hb_005976_050 Hb_026206_020 Hb_026206_020 Hb_001606_080--Hb_026206_020 Hb_027402_140 Hb_027402_140 Hb_001606_080--Hb_027402_140 Hb_000365_070 Hb_000365_070 Hb_001606_080--Hb_000365_070 Hb_006649_080 Hb_006649_080 Hb_001606_080--Hb_006649_080 Hb_000544_160 Hb_000544_160 Hb_078897_010--Hb_000544_160 Hb_010712_070 Hb_010712_070 Hb_078897_010--Hb_010712_070 Hb_001711_050 Hb_001711_050 Hb_078897_010--Hb_001711_050 Hb_000312_050 Hb_000312_050 Hb_078897_010--Hb_000312_050 Hb_002722_010 Hb_002722_010 Hb_078897_010--Hb_002722_010 Hb_031862_130--Hb_000215_080 Hb_031862_130--Hb_008695_140 Hb_000011_330 Hb_000011_330 Hb_031862_130--Hb_000011_330 Hb_000723_200 Hb_000723_200 Hb_031862_130--Hb_000723_200 Hb_005542_060 Hb_005542_060 Hb_031862_130--Hb_005542_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75213 1.22735 3.52839 3.32346 1.06737 3.62394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.397011 0.546041 8.74637 3.03696 0.907429

CAGE analysis