Hb_001711_050

Information

Type -
Description -
Location Contig1711: 34214-35341
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15984: 35464-36150 , PASA_asmbl_15985: 34215-37893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_050 0.0 - - -
2 Hb_160715_010 0.1727765992 - - -
3 Hb_002863_120 0.2000464036 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
4 Hb_000928_050 0.2049843251 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
5 Hb_000256_070 0.2126744563 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
6 Hb_138462_010 0.2316745069 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
7 Hb_010534_050 0.2343297118 - - PREDICTED: 40S ribosomal protein S7 [Jatropha curcas]
8 Hb_078897_010 0.2445131061 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
9 Hb_000312_050 0.2482442268 - - transcription factor, putative [Ricinus communis]
10 Hb_012738_030 0.2549853747 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006911_050 0.2574252078 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
12 Hb_000422_160 0.2687988089 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
13 Hb_000853_400 0.272229929 - - PREDICTED: CTP synthase [Jatropha curcas]
14 Hb_000206_190 0.2742041896 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
15 Hb_071869_010 0.2781160131 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
16 Hb_146834_010 0.2807725142 - - Uncharacterized protein TCM_035385 [Theobroma cacao]
17 Hb_001437_140 0.2811212116 - - -
18 Hb_009541_010 0.2860352471 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
19 Hb_176825_010 0.2878526388 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
20 Hb_148131_010 0.2886259374 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]

Gene co-expression network

sample Hb_001711_050 Hb_001711_050 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_000928_050 Hb_000928_050 Hb_001711_050--Hb_000928_050 Hb_000256_070 Hb_000256_070 Hb_001711_050--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_001711_050--Hb_138462_010 Hb_010534_050 Hb_010534_050 Hb_001711_050--Hb_010534_050 Hb_000422_160 Hb_000422_160 Hb_160715_010--Hb_000422_160 Hb_001437_140 Hb_001437_140 Hb_160715_010--Hb_001437_140 Hb_009541_010 Hb_009541_010 Hb_160715_010--Hb_009541_010 Hb_160715_010--Hb_000256_070 Hb_160715_010--Hb_138462_010 Hb_000206_190 Hb_000206_190 Hb_002863_120--Hb_000206_190 Hb_000853_400 Hb_000853_400 Hb_002863_120--Hb_000853_400 Hb_008778_010 Hb_008778_010 Hb_002863_120--Hb_008778_010 Hb_002035_080 Hb_002035_080 Hb_002863_120--Hb_002035_080 Hb_001882_130 Hb_001882_130 Hb_002863_120--Hb_001882_130 Hb_071869_010 Hb_071869_010 Hb_000928_050--Hb_071869_010 Hb_002154_070 Hb_002154_070 Hb_000928_050--Hb_002154_070 Hb_000928_050--Hb_010534_050 Hb_006960_010 Hb_006960_010 Hb_000928_050--Hb_006960_010 Hb_141296_010 Hb_141296_010 Hb_000928_050--Hb_141296_010 Hb_000656_160 Hb_000656_160 Hb_000256_070--Hb_000656_160 Hb_000103_250 Hb_000103_250 Hb_000256_070--Hb_000103_250 Hb_000889_100 Hb_000889_100 Hb_000256_070--Hb_000889_100 Hb_017014_010 Hb_017014_010 Hb_000256_070--Hb_017014_010 Hb_004088_040 Hb_004088_040 Hb_000256_070--Hb_004088_040 Hb_004899_060 Hb_004899_060 Hb_000256_070--Hb_004899_060 Hb_138462_010--Hb_141296_010 Hb_002611_030 Hb_002611_030 Hb_138462_010--Hb_002611_030 Hb_138462_010--Hb_017014_010 Hb_060458_010 Hb_060458_010 Hb_138462_010--Hb_060458_010 Hb_007527_070 Hb_007527_070 Hb_138462_010--Hb_007527_070 Hb_001050_060 Hb_001050_060 Hb_010534_050--Hb_001050_060 Hb_010534_050--Hb_071869_010 Hb_010534_050--Hb_141296_010 Hb_010534_050--Hb_000206_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2901 1.99107 4.96572 9.03554 0 9.84024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 7.80236 5.17837 3.55224

CAGE analysis