Hb_001437_140

Information

Type -
Description -
Location Contig1437: 125382-128504
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11526: 125181-128309 , PASA_asmbl_11527: 127062-127383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_140 0.0 - - -
2 Hb_039074_010 0.1559163743 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000244_260 0.178394605 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
4 Hb_002072_010 0.1810382661 - - conserved hypothetical protein [Ricinus communis]
5 Hb_059741_010 0.1873236645 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
6 Hb_004409_030 0.1884375637 - - Glutamine synthetase 1,4 [Theobroma cacao]
7 Hb_003471_020 0.1887833936 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
8 Hb_003371_190 0.1920825832 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
9 Hb_030565_110 0.1921821799 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
10 Hb_001148_080 0.1926834262 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
11 Hb_000029_440 0.1944149239 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
12 Hb_001021_070 0.1956920578 - - unnamed protein product [Vitis vinifera]
13 Hb_003058_200 0.1957472311 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
14 Hb_000566_030 0.1957539859 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
15 Hb_160715_010 0.196159298 - - -
16 Hb_005892_020 0.1961596022 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
17 Hb_011310_050 0.1964316267 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
18 Hb_002603_040 0.1969653693 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
19 Hb_000220_080 0.1971168392 - - kinase, putative [Ricinus communis]
20 Hb_003470_050 0.2026244598 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001437_140 Hb_001437_140 Hb_039074_010 Hb_039074_010 Hb_001437_140--Hb_039074_010 Hb_000244_260 Hb_000244_260 Hb_001437_140--Hb_000244_260 Hb_002072_010 Hb_002072_010 Hb_001437_140--Hb_002072_010 Hb_059741_010 Hb_059741_010 Hb_001437_140--Hb_059741_010 Hb_004409_030 Hb_004409_030 Hb_001437_140--Hb_004409_030 Hb_003471_020 Hb_003471_020 Hb_001437_140--Hb_003471_020 Hb_003371_190 Hb_003371_190 Hb_039074_010--Hb_003371_190 Hb_039074_010--Hb_059741_010 Hb_039074_010--Hb_000244_260 Hb_030565_110 Hb_030565_110 Hb_039074_010--Hb_030565_110 Hb_000679_040 Hb_000679_040 Hb_039074_010--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_039074_010--Hb_011310_050 Hb_000244_260--Hb_002072_010 Hb_000254_070 Hb_000254_070 Hb_000244_260--Hb_000254_070 Hb_000244_260--Hb_011310_050 Hb_000244_260--Hb_030565_110 Hb_003058_200 Hb_003058_200 Hb_000244_260--Hb_003058_200 Hb_002026_070 Hb_002026_070 Hb_000244_260--Hb_002026_070 Hb_002072_010--Hb_030565_110 Hb_002072_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_002072_010--Hb_000674_010 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_059741_010--Hb_011310_050 Hb_059741_010--Hb_000679_040 Hb_001216_110 Hb_001216_110 Hb_059741_010--Hb_001216_110 Hb_059741_010--Hb_000244_260 Hb_177343_010 Hb_177343_010 Hb_059741_010--Hb_177343_010 Hb_001210_040 Hb_001210_040 Hb_059741_010--Hb_001210_040 Hb_069659_010 Hb_069659_010 Hb_004409_030--Hb_069659_010 Hb_000220_080 Hb_000220_080 Hb_004409_030--Hb_000220_080 Hb_004409_030--Hb_003371_190 Hb_014497_040 Hb_014497_040 Hb_004409_030--Hb_014497_040 Hb_000000_110 Hb_000000_110 Hb_004409_030--Hb_000000_110 Hb_000000_120 Hb_000000_120 Hb_004409_030--Hb_000000_120 Hb_004040_040 Hb_004040_040 Hb_003471_020--Hb_004040_040 Hb_148131_010 Hb_148131_010 Hb_003471_020--Hb_148131_010 Hb_027136_010 Hb_027136_010 Hb_003471_020--Hb_027136_010 Hb_150346_010 Hb_150346_010 Hb_003471_020--Hb_150346_010 Hb_000424_150 Hb_000424_150 Hb_003471_020--Hb_000424_150 Hb_002814_060 Hb_002814_060 Hb_003471_020--Hb_002814_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63486 10.3165 10.6277 29.1668 5.82007 11.2592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 8.91159 24.3927 13.9767

CAGE analysis